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Sample GSM1029 Query DataSets for GSM1029
Status Public on Feb 12, 2002
Title Heat Shock 000 minutes (series 3)
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Heat Shock 000 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n081
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 80 78 131 153 121 34 32 30 115 145 .902 0 -.192 .96 51 63 1.083 1.143 .924 .875 .809 1377 80 96 106 69 79 -.192
2 79 78 13 39 6 35 33 31 6 37 .75 0 -1.193 .483 13 17 2.167 2.287 .462 .437 .402 1275 80 95 105 86 96 -1.193
3 79 78 432 322 290 34 32 30 275 305 .9 0 -.653 .673 80 87 1.49 1.572 .671 .636 .616 1276 80 95 105 103 113 -.653
4 78 77 17 44 13 32 31 29 12 42 .719 0 -.465 .705 15 20 1.308 1.38 .765 .725 .518 1268 80 95 105 121 131 -.465
5 78 77 301 248 216 33 32 30 205 235 .922 0 -.556 .745 70 78 1.394 1.471 .718 .68 .681 1261 80 95 105 138 148 -.556
6 79 77 24 41 9 33 32 30 9 39 .782 0 -1.493 .451 13 20 2.667 2.814 .375 .355 .386 1276 80 94 104 156 166 -1.493
7 80 77 150 123 91 34 32 30 86 117 .829 0 -.799 .633 68 70 1.648 1.74 .607 .575 .558 1276 80 94 104 173 183 -.799
8 78 75 3 29 33 31 29 -2 27 -.046 0 .8 3 11 -.032 1267 80 94 104 191 201
9 74 74 27 32 30 28 -3 26 -.179 0 .778 3 5 -.115 1261 80 94 104 208 218
10 77 76 2 33 1 35 32 30 1 31 -.03 0 -1.078 .483 0 8 2 2.111 .5 .474 -.021 1261 80 94 104 226 236 -1.078
11 88 80 35 1 46 34 32 1 33 .019 0 .5 5 11 .012 1283 80 93 103 243 253
12 88 81 7 35 2 46 33 31 2 33 .242 0 -1.885 .818 6 15 3.5 3.694 .286 .271 .142 1275 80 93 103 261 271 -1.885
13 80 78 1 31 35 32 30 -1 29 .243 0 .579 2 10 .158 1260 80 93 103 278 288
14 77 76 1 33 1 35 32 30 1 31 -.11 0 -.078 .412 5 12 1 1.055 1 .948 -.061 1261 80 93 103 295 305 -.078
15 76 74 5 35 3 34 32 30 3 33 -.069 0 -.815 .546 7 15 1.667 1.759 .6 .569 -.044 1283 80 92 102 313 323 -.815
16 76 75 5 32 34 32 30 0 30 -.022 0 .818 7 11 -.013 1276 80 92 102 330 340
17 76 75 2 35 2 34 33 31 2 33 .242 0 -.078 .387 3 18 1 1.055 1 .948 .152 1268 80 92 102 348 358 -.078
18 76 75 1 33 33 33 31 0 31 .189 0 .541 3 10 .105 1261 80 92 102 365 375
19 77 76 6 35 2 33 33 31 2 33 .143 0 -1.663 .417 7 17 3 3.166 .333 .316 .094 1253 80 92 102 383 393 -1.663
20 80 78 33 37 33 31 0 31 -.102 0 .955 1 12 -.068 1283 80 91 101 400 410

Total number of rows: 9216

Table truncated, full table size 1082 Kbytes.




Supplementary data files not provided
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