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Sample GSM1030 Query DataSets for GSM1030
Status Public on Feb 12, 2002
Title Heat Shock 005 minutes
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Heat Shock 005 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n082
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 44 39 135 114 96 21 18 19 102 121 .875 0 -.404 .729 67 72 1.406 1.324 .711 .756 .593 1281 112 87 99 63 75 -.404
2 38 36 82 74 59 18 15 16 63 79 .926 0 -.38 .683 26 37 1.39 1.302 .72 .768 .643 1157 112 86 98 80 92 -.38
3 33 32 405 311 298 15 13 14 317 331 .865 0 -.353 .667 70 75 1.359 1.278 .736 .783 .764 1157 112 86 98 98 110 -.353
4 34 32 23 34 21 14 13 14 22 36 .873 0 -.064 .632 18 37 1.095 1.045 .913 .957 .625 1157 112 86 98 115 127 -.064
5 34 32 203 159 146 14 13 14 155 169 .878 0 -.389 .742 62 66 1.39 1.31 .719 .764 .627 1148 112 86 98 133 145 -.389
6 34 33 14 24 11 14 13 14 12 26 .779 0 -.222 .667 20 31 1.273 1.167 .786 .857 .531 1139 112 86 98 150 162 -.222
7 35 34 85 117 105 14 12 13 111 124 .747 0 .385 .826 58 71 .81 .766 1.235 1.306 .955 1131 112 86 98 168 180 .385
8 37 35 9 11 13 12 13 12 .044 0 .319 29 18 .022 1131 112 86 98 185 197
9 37 35 1 14 1 14 13 14 1 15 .084 0 0 .5 13 20 1 1 1 1 .066 1131 112 86 98 203 215 0
10 36 35 2 15 1 14 14 15 1 16 -.098 0 -1 .833 16 24 2 2 .5 .5 -.063 1157 112 85 97 220 232 -1
11 36 35 1 15 1 14 14 15 1 16 .199 0 0 .619 17 25 1 1 1 1 .136 1157 112 85 97 238 250 0
12 36 34 14 15 14 15 15 -.03 0 1.083 11 25 -.02 1157 112 85 97 255 267
13 35 34 1 15 2 15 13 14 2 16 .256 0 1 .773 14 32 .5 .5 2 2 .19 1148 112 85 97 273 285 1
14 34 33 15 2 15 13 14 2 16 -.188 0 .818 10 27 -.125 1139 112 85 97 290 302
15 35 34 1 12 15 14 15 13 -.024 0 .375 14 10 -.012 1131 112 85 97 308 320
16 35 33 14 14 14 15 15 -.041 0 .6 15 26 -.025 1131 112 85 97 325 337
17 34 33 1 14 14 14 15 15 -.023 0 .867 15 17 -.014 1131 112 85 97 343 355
18 33 32 2 13 14 14 15 14 -.021 0 .75 15 19 -.014 1157 112 84 96 360 372
19 33 32 1 13 16 14 15 14 .158 0 .75 20 18 .089 1157 112 84 96 378 390
20 37 33 1 14 27 14 15 15 -.108 0 .375 17 22 -.062 1157 112 84 96 395 407

Total number of rows: 9216

Table truncated, full table size 1071 Kbytes.




Supplementary data files not provided
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