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| Status |
Public on Dec 19, 2006 |
| Title |
PAO1 in TSB, replicate 1 |
| Sample type |
RNA |
| |
|
| Source name |
PAO1 from broth
|
| Organism |
Pseudomonas aeruginosa |
| Characteristics |
Wild type PAO1
|
| Extracted molecule |
total RNA |
| Label |
biotin
|
| |
|
| Description |
Wild type PAO1 grown in TS broth to OD600 of 0.85
|
| Data processing |
standard Affymetrix procedures
|
| |
|
| Submission date |
Apr 05, 2006 |
| Last update date |
Dec 19, 2006 |
| Contact name |
S Chugani |
| E-mail(s) |
sac7@u.washington.edu
|
| Organization name |
University of Washington
|
| Street address |
1959 NE Pacific St, HSB I-420, Box 357242
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195 |
| Country |
USA |
| |
|
| Platform ID |
GPL84 |
| Series (1) |
| GSE4614 |
The Influence of Human Respiratory Epithelia on Pseudomonas aeruginosa Gene Expression |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5-calculated signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
p-value that indicates the significance of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-YEL002C_WPB1_at |
0.6 |
A |
0.960635 |
| AFFX-YEL018W_at |
6.7 |
A |
0.67917 |
| AFFX-YEL024W_RIP1_at |
1.4 |
A |
0.795978 |
| AFFX-YFL039C_ACT1_at |
10.5 |
A |
0.697453 |
| AFFX-YER148W_SPT15_at |
28.7 |
A |
0.732537 |
| AFFX-YER022W_SRB4_at |
0.3 |
A |
0.933135 |
| AFFX-Athal_GAPDH_at |
5 |
A |
0.660442 |
| AFFX-Athal_ubq_at |
14.8 |
A |
0.561639 |
| AFFX-Athal_actin_at |
2.6 |
A |
0.849473 |
| AFFX-Bsubtilis_dapB_at |
3.9 |
A |
0.892699 |
| AFFX-Bsubtilis_lys_at |
1 |
A |
0.901946 |
| AFFX-Bsubtilis_pheB_at |
3.6 |
A |
0.697453 |
| AFFX-Bsubtilis_thrC_at |
14.1 |
A |
0.621816 |
| AFFX-Bsubtilis_trpD_at |
22.4 |
A |
0.94553 |
| Pae_flgK_at |
111.2 |
A |
0.124432 |
| Pae_flgL_at |
20.4 |
A |
0.933521 |
| Pae_orfA_vioA_at |
25.1 |
A |
0.69991 |
| Pae_orfB_at |
93.8 |
P |
0.019622 |
| Pae_orfC_at |
172.6 |
A |
0.649648 |
| Pae_orfD_at |
142.9 |
A |
0.324822 |
Total number of rows: 5900
Table truncated, full table size 167 Kbytes.
| Supplementary data files not provided |
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