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Sample GSM1034 Query DataSets for GSM1034
Status Public on Feb 12, 2002
Title Heat Shock 060 minutes
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Heat Shock 060 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n085
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 41 39 120 85 71 27 14 23 114 137 .866 0 -.074 .603 49 57 1.69 1.053 .592 .95 .517 1152 156 67 81 47 61 -.074
2 41 39 50 55 40 23 15 24 65 89 .843 0 .379 .85 20 33 1.25 .769 .8 1.3 .682 973 156 66 80 64 78 .379
3 40 39 389 230 215 17 15 24 347 371 .888 0 -.165 .55 61 58 1.809 1.121 .553 .892 .494 985 156 66 80 81 95 -.165
4 40 39 38 40 26 16 14 23 42 65 .836 0 .144 .762 12 35 1.462 .905 .684 1.105 .492 987 156 66 80 99 113 .144
5 40 38 245 171 156 27 15 24 252 276 .886 0 .041 .667 55 57 1.571 .972 .637 1.029 .577 985 156 66 80 116 130 .041
6 40 38 29 32 17 26 15 24 28 52 .789 0 -.051 .8 21 24 1.706 1.036 .586 .966 .47 968 156 66 80 134 148 -.051
7 39 38 40 35 20 16 15 24 32 56 .804 0 -.322 .525 44 48 2 1.25 .5 .8 .453 964 156 66 80 151 165 -.322
8 40 39 15 19 15 24 24 .055 0 .692 13 19 .035 958 156 66 80 169 183
9 42 40 5 16 1 20 15 24 2 26 -.005 0 -1.322 .444 17 24 5 2.5 .2 .4 -.002 955 156 66 80 186 200 -1.322
10 47 44 3 17 1 21 16 26 1 27 .078 0 -1.585 .526 16 21 3 3 .333 .333 .033 958 156 66 80 204 218 -1.585
11 51 46 20 3 21 17 27 5 32 -.013 0 .818 4 23 -.021 955 156 66 80 221 235
12 48 44 6 20 2 23 18 29 3 32 -.064 0 -1 .706 22 26 3 2 .333 .5 -.037 988 156 65 79 239 253 -1
13 46 41 18 25 18 29 29 .038 0 .429 8 12 .03 985 156 65 79 256 270
14 44 41 1 21 3 25 18 29 5 34 .027 0 2.322 1.111 10 21 .333 .2 3 5 .045 988 156 65 79 274 288 2.322
15 45 44 15 36 17 22 19 31 27 58 .664 0 .848 .525 21 29 .882 .556 1.133 1.8 .788 985 156 65 79 291 305 .848
16 47 45 4 28 9 23 19 31 14 45 .248 0 1.807 .632 16 23 .444 .286 2.25 3.5 .408 978 156 65 79 309 323 1.807
17 48 46 20 1 24 19 31 1 32 -.05 0 .722 10 17 -.034 964 156 65 79 326 340
18 51 46 3 33 13 26 20 32 21 53 -.003 0 2.807 1 13 27 .231 .143 4.333 7 -.013 958 156 65 79 344 358 2.807
19 52 47 2 23 2 26 21 34 3 37 .015 0 .585 .833 12 26 1 .667 1 1.5 .011 943 156 65 79 361 375 .585
20 95 47 3 26 4 162 22 35 7 42 .158 0 1.222 .733 11 23 .75 .429 1.333 2.333 .134 955 156 65 79 378 392 1.222

Total number of rows: 9216

Table truncated, full table size 1066 Kbytes.




Supplementary data files not provided
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