GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM10392

Query DataSets for GSM10392

Status

Public on Sep 24, 2003

Title

mpkCCD, vasopressin 4 h

Sample type

SAGE

Anchor

Sau3A

Tag Count

67340

Tag Length

Source name

mpkCCDcl4 incubated with 10 nM AVP for 4 hours

Organism

Mus musculus

Extracted molecule

total RNA

Description

mpkCCD stands for Murine Principal Kidney Cortical Collecting Duct. mpkCCD consists of a clonal cell line that displays some of the properties of native principal collecting duct cells, e.g. responsiveness to aldosterone and vasopressin. The current transcriptome corresponds to mpkCCD cells incubated with 10 nM vasopressin for 4 hours. Data are provided after removal of tags derived from linkers sequences.
Keywords = cortical collecting duct
Keywords = kidney
Keywords = SADE
Keywords = AVP

Submission date

Sep 22, 2003

Last update date

Nov 19, 2008

Contact name

Jean-Marc Elalouf

E-mail(s)

jean-marc.elalouf@cea.fr

Phone

(33) 1 69088022

Fax

(33) 1 69084712

Organization name

CEA Saclay

Department

IBITEC-S

Lab

Laboratoire de PhysioGénomique

Street address

City

91191 Gif/ Yvette Cedex

ZIP/Postal code

91191

Country

France

Platform ID

GPL275

Series (1)

GSE678

Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
ATGCTAGTCT	1114	16542.92
TGCTTCAATA	938	13929.31
GTGGATGGCA	531	7885.36
ATAATCAGCC	485	7202.26
GAGAAGATGC	444	6593.41
TGCAACTGTT	422	6266.71
AGTCTTTAAA	407	6043.96
GCTGGACAGG	338	5019.31
GGGGTTTACC	322	4781.70
GAGAGGGCAA	289	4291.65
TTAACTGTTA	276	4098.60
AATGCCCTCA	265	3935.25
CAAAAAGCTA	258	3831.30
TGCGGTGACT	255	3786.75
CTGACCACAT	248	3682.80
TACAATGAAG	242	3593.70
GCCTGGAGAA	240	3564.00
AGGCTACTAC	232	3445.20
GGTGCCACCC	224	3326.40
ATCTTGTGAA	223	3311.55

Total number of rows: 20561

Table truncated, full table size 383 Kbytes.

Supplementary data files not provided