GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM10424

Query DataSets for GSM10424

Status

Public on Nov 08, 2003

Title

Kidney proximal straight tubule

Sample type

SAGE

Anchor

Sau3A

Tag Count

46664

Tag Length

Source name

microdissected proximal straight tubules

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Library generated from microdissected kidney proximal straight tubules obtained from the healthy pole of cancerous kidneys. Donors were from either sex. The library was generated using Sau3A I as anchoring enzyme. Data are provided after removal of linker derived sequences.
Keywords = microdissection
Keywords = nephron
Keywords = SADE

Submission date

Sep 24, 2003

Last update date

Nov 19, 2008

Contact name

Jean-Marc Elalouf

E-mail(s)

jean-marc.elalouf@cea.fr

Phone

(33) 1 69088022

Fax

(33) 1 69084712

Organization name

CEA Saclay

Department

IBITEC-S

Lab

Laboratoire de PhysioGénomique

Street address

City

91191 Gif/ Yvette Cedex

ZIP/Postal code

91191

Country

France

Platform ID

GPL6

Series (1)

GSE694

SADE analysis of microdissected kidney

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
AAATATCACT	1337	28651.64
TCTTATACTA	1296	27773.02
TGCTGCAGTG	787	16865.25
CCTCCCTTAC	718	15386.59
TAGAAATTGC	664	14229.38
GGCGCACTGC	604	12943.60
AACCAAGGCA	600	12857.88
TGAGTTCAGA	513	10993.49
CGTCCCTAAC	384	8229.04
GCCGTTCTGG	356	7629.01
AACCTCACCA	346	7414.71
AGGACATCCC	336	7200.41
TTCATGCCCT	330	7071.83
CGTCCTAATC	279	5978.91
AAATTTCACA	255	5464.60
ACGCCCTCAT	255	5464.60
GCGCCACTGC	255	5464.60
CCCACCTCCA	234	5014.57
AATATCACTC	231	4950.28
AAACAACCCC	223	4778.84

Total number of rows: 16314

Table truncated, full table size 304 Kbytes.

Supplementary data files not provided