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Sample GSM10430 Query DataSets for GSM10430
Status Public on Oct 02, 2003
Title Whole kidney
Sample type SAGE
Anchor Sau3A
Tag Count 14406
Tag Length 10
 
Source name adult (8-10 weeks old) mouse kidneys
Organism Mus musculus
Extracted molecule total RNA
 
Description Pool of three libraries generated from the mouse kidney (8-10 weeks old male mice). Most of the tags (N = 12,154) originate from a SAGE library generated using the original protocol (Velculescu et al., Science 270: 484-487, 1995). The remaining tags originate from two libraries obtained using the SADE method (Virlon et al., Proc. Natl. Acad. Sci. USA 96: 15286-15291, 1999). Data are provided after removal of linker derived sequences.
Keywords = microsage
Keywords = nephron
Keywords = SADE
 
Submission date Sep 24, 2003
Last update date Nov 19, 2008
Contact name Jean-Marc Elalouf
E-mail(s) jean-marc.elalouf@cea.fr
Phone (33) 1 69088022
Fax (33) 1 69084712
Organization name CEA Saclay
Department IBITEC-S
Lab Laboratoire de PhysioGénomique
Street address
City 91191 Gif/ Yvette Cedex
ZIP/Postal code 91191
Country France
 
Platform ID GPL275
Series (1)
GSE694 SADE analysis of microdissected kidney

Data table header descriptions
TAG Tag sequence
COUNT Tag abundance
TPM tags per million

Data table
TAG COUNT TPM
TGCTTCAATA 676 46924.89
CCACTGCACA 440 30542.83
CATGACATCC 369 25614.33
CTGGATGAGA 319 22143.55
AACTTATACA 241 16729.14
AAACAACCCA 216 14993.75
AAACTTTACC 199 13813.69
AACAAATCTC 169 11731.22
TTTATAATTT 167 11592.39
TGCATGCCCT 139 9648.76
ATCGACACTT 132 9162.85
ACCAGGACCT 94 6525.06
TTAAAAAAAA 82 5692.07
CCCACTTATG 75 5206.16
AGCATTGAGC 72 4997.92
GTGACTGGGT 60 4164.93
TAACCATAGC 58 4026.10
TGACGTGCCG 53 3679.02
TCTACACGAA 51 3540.19
CTTAACTTCC 47 3262.53

Total number of rows: 5661

Table truncated, full table size 106 Kbytes.




Supplementary data files not provided

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