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Sample GSM1045 Query DataSets for GSM1045
Status Public on Feb 12, 2002
Title steady state 33 dec C
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 33 deg C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n091
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 34 31 26 38 25 15 13 13 27 40 .74 0 .054 .89 42 53 1.04 .963 .962 1.038 .66 1142 177 57 72 76 91 .054
2 33 31 1 14 1 14 13 13 1 14 .17 0 0 .46 21 28 1 1 1 1 .08 928 177 56 71 94 109 0
3 32 30 85 69 56 14 13 13 59 72 .86 0 -.527 .66 54 61 1.518 1.441 .659 .694 .59 928 177 56 71 111 126 -.527
4 34 30 1 14 1 14 13 13 1 14 .08 0 0 .5 25 28 1 1 1 1 .05 928 177 56 71 129 144 0
5 33 30 57 58 45 14 13 13 48 61 .85 0 -.248 .79 47 54 1.267 1.188 .789 .842 .63 919 177 56 71 146 161 -.248
6 32 30 1 16 3 14 13 13 3 16 .22 0 1.585 .7 20 30 .333 .333 3 3 .14 905 177 56 71 164 179 1.585
7 32 30 31 25 12 14 13 13 13 26 .67 0 -1.254 .42 46 47 2.583 2.385 .387 .419 .29 896 177 56 71 181 196 -1.254
8 33 30 3 14 1 14 13 13 1 14 .02 0 -1.585 .53 23 28 3 3 .333 .333 .01 896 177 56 71 199 214 -1.585
9 34 32 1 12 -1 13 13 13 -1 12 .04 0 .61 23 21 0 .02 928 177 55 70 216 231
10 32 30 13 1 13 12 12 1 13 .13 0 .66 19 30 0 .06 928 177 55 70 234 249
11 32 30 1 13 1 13 12 12 1 13 -.04 0 0 .84 25 28 1 1 1 1 -.02 928 177 55 70 251 266 0
12 31 30 3 14 2 13 12 12 2 14 -.03 0 -.585 .42 22 28 1.5 1.5 .667 .667 -.02 918 177 55 70 269 284 -.585
13 31 30 3 13 13 13 13 13 -.12 0 .53 23 27 0 -.06 906 177 55 70 286 301
14 30 30 3 14 1 13 13 13 1 14 .03 0 -1.585 .6 24 24 3 3 .333 .333 .01 896 177 55 70 304 319 -1.585
15 31 30 -1 12 13 12 12 12 -.15 0 .53 17 25 0 -.07 896 177 55 70 321 336
16 37 31 49 28 14 16 14 14 15 29 .42 0 -1.708 .35 73 63 3.5 3.267 .286 .306 .15 896 177 55 70 339 354 -1.708
17 37 30 17 19 5 15 14 14 6 20 .63 0 -1.503 .48 32 31 3.4 2.833 .294 .353 .25 928 177 54 69 356 371 -1.503
18 31 29 1 14 2 13 12 12 2 14 .03 0 1 .74 21 32 .5 .5 2 2 .02 928 177 54 69 374 389 1
19 32 30 1 13 14 13 13 13 .01 0 .63 18 24 0 .01 919 177 54 69 391 406
20 31 30 -1 12 -1 14 13 13 -1 12 .01 0 1.06 16 25 0 0 905 177 54 69 409 424

Total number of rows: 9216

Table truncated, full table size 1022 Kbytes.




Supplementary data files not provided
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