|
Status |
Public on Jan 15, 2013 |
Title |
GAL-Scc1-HA, - break, Rad30del. INPUT |
Sample type |
SRA |
|
|
Source name |
GAL-Scc1-HA, - break, Rad30del. INPUT
|
Organism |
Saccharomyces cerevisiae |
Characteristics |
chip antibody: input DNA cell cycle: G2 (benomyl) genotype: rad30 deletion
|
Growth protocol |
Cells grown in YEP media supplemented with 2% raffinose (YEPR) were arrested in G2/M, by addition of benomyl.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Cells were broken by beadbeater and sonication. The 5500 SOLiD™ Fragment Library Core Kit(#4464412)
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
AB SOLiD System |
|
|
Data processing |
Basecalls performed using Corona then mapped to S.c erevisiae whole genome using bowtie v0.12.2 with parameters -n3 -m10 Data were visualized using Cairo Genome_build: Saccer1 Supplementary_files_format_and_content: wig files
|
|
|
Submission date |
Nov 30, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Yuki KATOU |
E-mail(s) |
ykatou@iam.u-tokyo.ac.jp
|
Organization name |
Research assistant
|
Street address |
1-1-1 Yayoi,Bunkyo-ku
|
City |
Tokyo |
ZIP/Postal code |
113-0032 |
Country |
Japan |
|
|
Platform ID |
GPL10577 |
Series (1) |
GSE42655 |
Importance of Polη for damage-induced cohesion reveals differential regulation of cohesion establishment at the break site and genome-wide |
|
Relations |
SRA |
SRX207909 |
BioSample |
SAMN01821753 |
Supplementary file |
Size |
Download |
File type/resource |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrI.wig.gz |
82.0 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrII.wig.gz |
289.6 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrIII.wig.gz |
115.1 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrIV.wig.gz |
538.7 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrIX.wig.gz |
159.3 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrM.wig.gz |
14.9 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrV.wig.gz |
206.4 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrVI.wig.gz |
100.0 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrVII.wig.gz |
383.5 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrVIII.wig.gz |
201.4 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrX.wig.gz |
265.6 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXI.wig.gz |
235.9 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXII.wig.gz |
390.8 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXIII.wig.gz |
325.9 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXIV.wig.gz |
274.2 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXV.wig.gz |
386.3 Kb |
(ftp)(http) |
WIG |
GSM1047393_Katou-2011AA-Library15-n3-k1-10_chrXVI.wig.gz |
336.0 Kb |
(ftp)(http) |
WIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |