|
| Status |
Public on Jan 15, 2013 |
| Title |
GAL-Scc1-HA, - break, Rad30del. IP |
| Sample type |
SRA |
| |
|
| Source name |
GAL-Scc1-HA, - break, Rad30del. IP
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
chip antibody: HA11
chip antibody manufacturer: Covance
cell cycle: G2 (benomyl)
genotype: rad30 deletion
|
| Growth protocol |
Cells grown in YEP media supplemented with 2% raffinose (YEPR) were arrested in G2/M, by addition of benomyl.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Cells were broken by beadbeater and sonication.
The 5500 SOLiD™ Fragment Library Core Kit(#4464412)
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
AB SOLiD System |
| |
|
| Data processing |
Basecalls performed using Corona
then mapped to S.c erevisiae whole genome using bowtie v0.12.2 with parameters -n3 -m10
Data were visualized using Cairo
Genome_build: Saccer1
Supplementary_files_format_and_content: wig files
|
| |
|
| Submission date |
Nov 30, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Yuki KATOU |
| E-mail(s) |
ykatou@iam.u-tokyo.ac.jp
|
| Organization name |
Research assistant
|
| Street address |
1-1-1 Yayoi,Bunkyo-ku
|
| City |
Tokyo |
| ZIP/Postal code |
113-0032 |
| Country |
Japan |
| |
|
| Platform ID |
GPL10577 |
| Series (1) |
| GSE42655 |
Importance of Polη for damage-induced cohesion reveals differential regulation of cohesion establishment at the break site and genome-wide |
|
| Relations |
| SRA |
SRX207910 |
| BioSample |
SAMN01821754 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrI.wig.gz |
80.0 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrII.wig.gz |
290.4 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrIII.wig.gz |
113.0 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrIV.wig.gz |
545.1 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrIX.wig.gz |
158.3 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrM.wig.gz |
35.2 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrV.wig.gz |
207.0 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrVI.wig.gz |
96.7 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrVII.wig.gz |
388.0 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrVIII.wig.gz |
201.1 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrX.wig.gz |
265.4 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXI.wig.gz |
237.4 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXII.wig.gz |
391.8 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXIII.wig.gz |
328.5 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXIV.wig.gz |
274.8 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXV.wig.gz |
387.9 Kb |
(ftp)(http) |
WIG |
| GSM1047394_Katou-2011AA-Library16-n3-k1-10_chrXVI.wig.gz |
338.2 Kb |
(ftp)(http) |
WIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
