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Sample GSM1047478 Query DataSets for GSM1047478
Status Public on Dec 10, 2015
Title Pilocytic astrocytoma [PA11 miRNA]
Sample type RNA
 
Source name Paediartric brain tumour PA11
Organism Homo sapiens
Characteristics tissue: Pilocytic astrocytoma
grade: I
Sex: M
age: 6
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Dec 10, 2015
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL8179
Series (2)
GSE42657 MicroRNA expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
PA11.Detection Pval

Data table
ID_REF VALUE PA11.Detection Pval
ILMN_3167304 397.3994 0.6543673
ILMN_3168038 569.7623 0.2133705
ILMN_3167890 40378.24 3.68E-38
ILMN_3167526 791.412 0.009968585
ILMN_3167209 303.2101 0.8527898
ILMN_3168219 1022.318 4.35E-05
ILMN_3167464 723.2249 0.03172657
ILMN_3167213 450.5037 0.511932
ILMN_3167057 761.9168 0.0168533
ILMN_3168313 384.9367 0.6855659
ILMN_3166972 390.6182 0.6714903
ILMN_3168149 1430.532 7.58E-12
ILMN_3168527 388.895 0.6757864
ILMN_3167562 431.3421 0.5645119
ILMN_3168099 2731.588 3.68E-38
ILMN_3168017 1267.685 9.52E-09
ILMN_3167545 375.031 0.7094643
ILMN_3167951 699.5607 0.0452887
ILMN_3167172 410.679 0.6199341
ILMN_3167994 683.5409 0.05687274

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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