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Sample GSM1047496 Query DataSets for GSM1047496
Status Public on Dec 10, 2015
Title Ependymoma [E4 miRNA]
Sample type RNA
 
Source name Paediartric brain tumour E4
Organism Homo sapiens
Characteristics tissue: Ependymoma
grade: III
Sex: F
age: 2
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Dec 10, 2015
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL8179
Series (2)
GSE42657 MicroRNA expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
E4.Detection Pval

Data table
ID_REF VALUE E4.Detection Pval
ILMN_3167304 385.6269 0.7350183
ILMN_3168038 496.33 0.4398732
ILMN_3167890 40627.59 3.68E-38
ILMN_3167526 570.7047 0.249873
ILMN_3167209 366.7429 0.7766731
ILMN_3168219 768.618 0.0193104
ILMN_3167464 635.8629 0.1284803
ILMN_3167213 466.9023 0.5222819
ILMN_3167057 4855.128 3.68E-38
ILMN_3168313 530.0944 0.348641
ILMN_3166972 485.5995 0.4698097
ILMN_3168149 1168.338 5.25E-07
ILMN_3168527 685.1841 0.06932641
ILMN_3167562 360.8138 0.7889394
ILMN_3168099 3719.154 3.68E-38
ILMN_3168017 1333.363 7.54E-10
ILMN_3167545 418.9145 0.6531046
ILMN_3167951 752.6991 0.02522463
ILMN_3167172 454.3277 0.5574104
ILMN_3167994 798.3452 0.01137867

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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