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Sample GSM1047519 Query DataSets for GSM1047519
Status Public on Dec 10, 2015
Title Atypical teratoid/rhabdoid tumour [R4 miRNA]
Sample type RNA
 
Source name Paediartric brain tumour R4
Organism Homo sapiens
Characteristics tissue: Atypical teratoid/rhabdoid tumour
grade: IV
Sex: M
age: 9 months
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Dec 10, 2015
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL8179
Series (2)
GSE42657 MicroRNA expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
R4.Detection Pval

Data table
ID_REF VALUE R4.Detection Pval
ILMN_3167304 377.305 0.7353236
ILMN_3168038 877.0321 0.01068207
ILMN_3167890 40378.24 3.68E-38
ILMN_3167526 383.9858 0.7223431
ILMN_3167209 323.3592 0.8277575
ILMN_3168219 723.2249 0.08082623
ILMN_3167464 718.6102 0.08495803
ILMN_3167213 348.6924 0.7872115
ILMN_3167057 580.5204 0.2868216
ILMN_3168313 422.4893 0.6420806
ILMN_3166972 400.8513 0.6882566
ILMN_3168149 947.811 0.00329842
ILMN_3168527 370.4239 0.7483626
ILMN_3167562 365.6349 0.757233
ILMN_3168099 3141.214 3.68E-38
ILMN_3168017 1096.278 0.000167176
ILMN_3167545 442.0532 0.5984356
ILMN_3167951 1713.86 2.84E-13
ILMN_3167172 482.6646 0.5044474
ILMN_3167994 559.6591 0.3298385

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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