|
| Status |
Public on Apr 30, 2013 |
| Title |
SCC #2 TM |
| Sample type |
RNA |
| |
|
| Source name |
SCC_tumor_in situ
|
| Organism |
Homo sapiens |
| Characteristics |
subject: patient 7
condition: in situ squamous cell carcinoma
amplification: Double
material: sliced section
|
| Extracted molecule |
total RNA |
| Extraction protocol |
QIAGEN Rneasy Kit
|
| Label |
biotin
|
| Label protocol |
Affymetrix double amplification protocol
|
| |
|
| Hybridization protocol |
Affymetrix protocol
|
| Scan protocol |
Hewlett-Packard GeneArray Scanner G25Time: 0Time: 0A.
|
| Data processing |
GCRMA (using gcrma package from R/Bioconductor)
|
| |
|
| Submission date |
Dec 03, 2012 |
| Last update date |
Apr 30, 2013 |
| Contact name |
Mayte Suarez-Farinas |
| E-mail(s) |
mayte.suarezfarinas@mssm.edu
|
| Organization name |
Mount SinaiSchool of Medicine
|
| Street address |
1425 Madison Ave, L2-70C, Box 1077,
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10075 |
| Country |
USA |
| |
|
| Platform ID |
GPL571 |
| Series (1) |
| GSE42677 |
Defining an invasion signature at the leading edge of cutaneous squamous cell carcinoma (SCC): IL-24 driven MMP-7 and MMP-13 expression. |
|
