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Sample GSM1052716 Query DataSets for GSM1052716
Status Public on Jan 10, 2013
Title meningiomas_254
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: malignant
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R01C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.07111261
cg00000108 0.603669464
cg00000109 0.673470116
cg00000165 0.631657033
cg00000236 0.934120274
cg00000289 0.663464024
cg00000292 0.64913648
cg00000321 0.236203467
cg00000363 0.098925748
cg00000622 0.015297004
cg00000658 0.88083969
cg00000714 0.088151983
cg00000721 0.952046314
cg00000734 0.078065205
cg00000769 0.023352802
cg00000807 0.857591532
cg00000884 0.944778388
cg00000905 0.086070126
cg00000924 0.569051391
cg00000948 0.932382482

Total number of rows: 485577

Table truncated, full table size 10836 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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