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Sample GSM1052718 Query DataSets for GSM1052718
Status Public on Jan 10, 2013
Title meningiomas_274
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Male
tissue type: meningiomas
subtype: benign
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R03C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.842188178
cg00000108 0.978281546
cg00000109 0.909096213
cg00000165 0.357112539
cg00000236 0.927487726
cg00000289 0.645163348
cg00000292 0.697734296
cg00000321 0.50571492
cg00000363 0.272654481
cg00000622 0.014737522
cg00000658 0.882759515
cg00000714 0.125479388
cg00000721 0.966145988
cg00000734 0.101838277
cg00000769 0.016906027
cg00000807 0.895000099
cg00000884 0.953085004
cg00000905 0.063194548
cg00000924 0.630547865
cg00000948 0.934687574

Total number of rows: 485577

Table truncated, full table size 10843 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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