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Sample GSM1052719 Query DataSets for GSM1052719
Status Public on Jan 10, 2013
Title meningiomas_311
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: atypical
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R04C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.665639675
cg00000108 0.875678147
cg00000109 0.929410565
cg00000165 0.120365567
cg00000236 0.931082415
cg00000289 0.748235784
cg00000292 0.386943945
cg00000321 0.683463717
cg00000363 0.24317434
cg00000622 0.01208444
cg00000658 0.91127283
cg00000714 0.142006079
cg00000721 0.969899173
cg00000734 0.096613885
cg00000769 0.020765985
cg00000807 0.898744429
cg00000884 0.946431248
cg00000905 0.112234109
cg00000924 0.614325414
cg00000948 0.957044615

Total number of rows: 485577

Table truncated, full table size 10840 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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