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Sample GSM1052720 Query DataSets for GSM1052720
Status Public on Jan 10, 2013
Title meningiomas_320
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Male
tissue type: meningiomas
subtype: atypical
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R05C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.716741616
cg00000108 0.965776163
cg00000109 0.896541697
cg00000165 0.184859993
cg00000236 0.860437662
cg00000289 0.649721199
cg00000292 0.731956434
cg00000321 0.648989071
cg00000363 0.347945052
cg00000622 0.010556071
cg00000658 0.942292944
cg00000714 0.239495364
cg00000721 0.977129678
cg00000734 0.094328166
cg00000769 0.028350985
cg00000807 0.893418865
cg00000884 0.945225488
cg00000905 0.130937802
cg00000924 0.640219146
cg00000948 0.952751933

Total number of rows: 485577

Table truncated, full table size 10821 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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