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Sample GSM1052721 Query DataSets for GSM1052721
Status Public on Jan 10, 2013
Title meningiomas_347
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: benign
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R06C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.564757347
cg00000108 0.985878586
cg00000109 0.945762019
cg00000165 0.217853354
cg00000236 0.920768622
cg00000289 0.71024924
cg00000292 0.559654113
cg00000321 0.626365938
cg00000363 0.217149365
cg00000622 0.010702188
cg00000658 0.945262185
cg00000714 0.154592795
cg00000721 0.976376588
cg00000734 0.086263812
cg00000769 0.016888861
cg00000807 0.914588964
cg00000884 0.958153136
cg00000905 0.05922814
cg00000924 0.635983094
cg00000948 0.946890115

Total number of rows: 485577

Table truncated, full table size 10823 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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