NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1052726 Query DataSets for GSM1052726
Status Public on Jan 10, 2013
Title meningiomas_404
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: benign
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671097_R05C01
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.414308004
cg00000108 0.976741084
cg00000109 0.930819894
cg00000165 0.159501303
cg00000236 0.920281975
cg00000289 0.601289701
cg00000292 0.527664707
cg00000321 0.357731924
cg00000363 0.166124063
cg00000622 0.009950348
cg00000658 0.947652036
cg00000714 0.133790488
cg00000721 0.965975625
cg00000734 0.094092405
cg00000769 0.012546689
cg00000807 0.946361191
cg00000884 0.947123013
cg00000905 0.104488144
cg00000924 0.653407725
cg00000948 0.959857402

Total number of rows: 485577

Table truncated, full table size 10805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.