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Sample GSM1052729 Query DataSets for GSM1052729
Status Public on Jan 10, 2013
Title meningiomas_678
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: atypical
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671097_R02C02
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.556602335
cg00000108 0.813424343
cg00000109 0.941995469
cg00000165 0.130970108
cg00000236 0.856517008
cg00000289 0.694456404
cg00000292 0.727922993
cg00000321 0.273588236
cg00000363 0.145577539
cg00000622 0.013414537
cg00000658 0.933979672
cg00000714 0.119333602
cg00000721 0.954618364
cg00000734 0.075132634
cg00000769 0.015662515
cg00000807 0.761029571
cg00000884 0.939761432
cg00000905 0.087167915
cg00000924 0.890808867
cg00000948 0.946063645

Total number of rows: 485577

Table truncated, full table size 10795 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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