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Sample GSM1053 Query DataSets for GSM1053
Status Public on Feb 12, 2002
Title dtt 240 min
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name dtt 240
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n074
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 23 20 24 26 11 17 15 17 13 30 .51 0 -.885 .57 50 47 2.182 1.846 .458 .542 .2 1119 177 55 70 51 66 -.885
2 23 21 12 27 11 17 16 19 13 32 .88 0 .115 1.03 32 27 1.091 .923 .917 1.083 .68 896 177 55 70 68 83 .115
3 22 20 70 55 39 16 16 19 46 65 .87 0 -.606 .72 57 53 1.795 1.522 .557 .657 .42 896 177 55 70 86 101 -.606
4 23 21 10 28 12 17 16 19 14 33 .71 0 .485 .96 30 33 .833 .714 1.2 1.4 .61 896 177 55 70 103 118 .485
5 24 21 28 34 18 18 16 19 21 40 .83 0 -.415 .84 47 42 1.556 1.333 .643 .75 .47 896 177 55 70 121 136 -.415
6 23 20 10 23 7 18 16 19 8 27 .63 0 -.322 .7 33 31 1.429 1.25 .7 .8 .41 896 177 55 70 138 153 -.322
7 21 19 22 25 10 17 15 17 12 29 .57 0 -.874 .7 53 42 2.2 1.833 .455 .545 .27 896 177 55 70 156 171 -.874
8 21 19 2 17 1 17 16 19 1 20 -.02 0 -1 .68 30 28 2 2 .5 .5 -.01 896 177 55 70 173 188 -1
9 20 18 3 17 2 17 15 17 3 20 .06 0 0 .9 30 28 1.5 1 .667 1 .05 928 177 54 69 191 206 0
10 19 17 2 16 17 16 19 19 -.1 0 1.2 30 25 0 -.06 928 177 54 69 208 223
11 20 18 3 16 18 16 19 19 -.02 0 .88 34 23 0 -.01 928 177 54 69 226 241
12 21 19 6 21 5 17 16 19 6 25 .89 0 0 .91 28 28 1.2 1 .833 1 .78 928 177 54 69 243 258 0
13 22 20 1 16 17 16 19 19 -.12 0 1.05 28 19 0 -.07 928 177 54 69 261 276
14 23 20 2 17 1 17 16 19 1 20 .1 0 -1 .87 27 25 2 2 .5 .5 .06 928 177 54 69 278 293 -1
15 28 21 1 17 1 19 16 19 1 20 .06 0 0 .72 28 20 1 1 1 1 .04 928 177 54 69 296 311 0
16 27 20 2 18 2 19 16 19 2 21 .06 0 0 1.39 24 26 1 1 1 1 .05 919 177 54 69 313 328 0
17 21 19 2 18 2 22 16 19 2 21 .1 0 0 1.2 30 33 1 1 1 1 .07 905 177 54 69 331 346 0
18 21 18 2 18 2 22 16 19 2 21 .07 0 0 .92 25 28 1 1 1 1 .05 896 177 54 69 348 363 0
19 20 18 2 17 1 18 16 19 1 20 .07 0 -1 1.05 27 22 2 2 .5 .5 .05 896 177 54 69 366 381 -1
20 20 18 3 17 1 17 16 19 1 20 -.03 0 -1.585 .92 28 27 3 3 .333 .333 -.02 896 177 54 69 383 398 -1.585

Total number of rows: 9216

Table truncated, full table size 1017 Kbytes.




Supplementary data files not provided
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