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Sample GSM1054 Query DataSets for GSM1054
Status Public on Feb 12, 2002
Title dtt 480 min
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name dtt 480
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n075
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 62 60 29 47 14 36 33 33 14 47 .53 0 -1.051 .6 37 37 2.071 2.071 .483 .483 .25 1151 177 54 69 115 130 -1.051
2 62 60 15 49 14 36 35 35 15 50 .74 0 0 1.02 16 20 1.071 1 .933 1 .49 928 177 54 69 132 147 0
3 61 60 125 91 55 36 36 36 56 92 .89 0 -1.158 .44 53 42 2.273 2.232 .44 .448 .43 919 177 54 69 150 165 -1.158
4 60 58 14 51 15 36 36 36 16 52 .78 0 .193 .92 16 23 .933 .875 1.071 1.143 .59 928 177 54 69 167 182 .193
5 59 56 75 82 48 35 34 34 49 83 .88 0 -.614 .66 42 37 1.563 1.531 .64 .653 .59 928 177 54 69 185 200 -.614
6 59 57 22 51 16 36 35 35 17 52 .88 0 -.372 .46 19 18 1.375 1.294 .727 .773 .63 928 177 54 69 202 217 -.372
7 60 59 58 78 43 36 35 35 44 79 .84 0 -.399 .77 45 37 1.349 1.318 .741 .759 .7 928 177 54 69 220 235 -.399
8 60 58 1 36 2 35 34 34 2 36 -.03 0 1 .35 16 13 .5 .5 2 2 -.01 928 177 54 69 237 252 1
9 60 57 8 32 -3 35 35 35 -3 32 .17 0 .42 21 8 0 .09 928 177 54 69 255 270
10 62 59 4 34 1 34 33 33 1 34 .1 0 -2 .74 12 15 4 4 .25 .25 .06 928 177 54 69 272 287 -2
11 63 61 3 32 -1 34 33 33 -1 32 .01 0 .63 15 10 0 0 928 177 54 69 290 305
12 63 61 3 34 1 34 33 33 1 34 .07 0 -1.585 .51 12 15 3 3 .333 .333 .04 928 177 54 69 307 322 -1.585
13 63 61 1 36 1 37 35 35 1 36 .05 0 0 .5 14 13 1 1 1 1 .03 928 177 54 69 325 340 0
14 62 60 3 38 2 37 36 36 2 38 -.17 0 -.585 .82 14 14 1.5 1.5 .667 .667 -.1 928 177 54 69 342 357 -.585
15 62 61 1 36 1 36 35 35 1 36 .13 0 0 .55 14 12 1 1 1 1 .07 928 177 54 69 360 375 0
16 62 60 3 36 36 36 36 36 .06 0 .6 15 15 0 .03 928 177 54 69 377 392
17 62 61 37 -1 38 38 38 -1 37 -.16 0 .81 8 9 0 -.09 928 177 54 69 395 410
18 59 58 41 2 39 39 39 2 41 .1 0 .71 16 16 0 .06 928 177 54 69 412 427
19 60 58 4 38 39 38 38 38 -.06 0 .51 16 8 0 -.03 928 177 54 69 430 445
20 62 60 1 40 2 39 38 38 2 40 -.06 0 1 .55 14 11 .5 .5 2 2 -.03 919 177 54 69 447 462 1

Total number of rows: 9216

Table truncated, full table size 1018 Kbytes.




Supplementary data files not provided
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