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Sample GSM1056118 Query DataSets for GSM1056118
Status Public on Aug 05, 2013
Title DGM-11103_sm
Sample type RNA
 
Source name small airway epithelium (SAE), S
Organism Homo sapiens
Characteristics smoking status: S
Extracted molecule total RNA
Extraction protocol Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 7G.
Description gene expression
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Dec 20, 2012
Last update date May 08, 2014
Contact name Yael Strulovici-Barel
E-mail(s) yas2003@med.cornell.edu
Organization name Weill Cornell Medical College
Department Department of Genetic Medicine
Lab Crystal
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL570
Series (6)
GSE43079 Cigarette Smoking Induces Small Airway Epithelial Epigenetic Changes with Corresponding Modulation of Gene Expression
GSE52237 Smoking accelerated aging of the small airway epithelium
GSE76324 Role of OSGIN1 in Mediating Smoking-induced Autophagy in the Human Airway Epithelium [array]

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 117.054 P 0.00933744
AFFX-BioB-M_at 142.985 P 0.00255552
AFFX-BioB-3_at 92.8569 P 0.0464816
AFFX-BioC-5_at 1893.54 P 7.00668e-05
AFFX-BioC-3_at 2647.4 P 4.42873e-05
AFFX-BioDn-5_at 7226.74 P 4.42873e-05
AFFX-BioDn-3_at 11456 P 5.16732e-05
AFFX-CreX-5_at 32608.6 P 5.16732e-05
AFFX-CreX-3_at 33451.9 P 4.42873e-05
AFFX-DapX-5_at 1754.49 P 4.42873e-05
AFFX-DapX-M_at 5192.91 P 8.14279e-05
AFFX-DapX-3_at 8634.53 P 4.42873e-05
AFFX-LysX-5_at 316.643 P 5.16732e-05
AFFX-LysX-M_at 563.21 P 0.00010954
AFFX-LysX-3_at 1162.4 P 5.16732e-05
AFFX-PheX-5_at 332.9 P 4.42873e-05
AFFX-PheX-M_at 635.26 P 4.42873e-05
AFFX-PheX-3_at 729.192 P 4.42873e-05
AFFX-ThrX-5_at 268.06 P 7.00668e-05
AFFX-ThrX-M_at 747.972 P 7.00668e-05

Total number of rows: 54675

Table truncated, full table size 1648 Kbytes.




Supplementary file Size Download File type/resource
GSM1056118_DGM-11103_M0_sm.CEL.gz 8.1 Mb (ftp)(http) CEL
GSM1056118_DGM-11103_M0_sm.CHP.gz 13.4 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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