|
Status |
Public on Dec 02, 2013 |
Title |
HUG1N shRNA Rep2 |
Sample type |
RNA |
|
|
Source name |
HUG1N shRNA treated cells
|
Organism |
Homo sapiens |
Characteristics |
cell line: HuG-1
|
Treatment protocol |
Cells were infected with GATA6 shRNA, selected with puromycin and harvested.
|
Growth protocol |
ATCC recommended media conditions at 37 degrees.
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Labeling was performed following the Affymetrix GeneChip 3’ IVT Express Kit instructions.
|
|
|
Hybridization protocol |
Hybridization was performed following the Affymetrix GeneChip 3’ IVT Express Kit instructions; washing and staining was done with the Affymetrix Fluidics Station 450.
|
Scan protocol |
Scanning was performed according to manufacturer's instructions using the Affymetrix GeneChip Scanner 3000 7G.
|
Description |
Gene expression data from HuG-1 cells treated with GATA6 shRNA.
|
Data processing |
The .CEL files were GCRMA normalized using R/Bioconductor.
|
|
|
Submission date |
Dec 28, 2012 |
Last update date |
Dec 02, 2013 |
Contact name |
Ramesh Shivdasani |
E-mail(s) |
ramesh_shivdasani@dfci.harvard.edu
|
Phone |
+1 617 632 5746
|
Organization name |
Dana-Farber Cancer Institute
|
Department |
Department of Medical Oncology
|
Lab |
Ramesh Shivdasani
|
Street address |
Dana Bldg, Room 720, 450 Brookline Ave
|
City |
Boston |
State/province |
Massachusetts |
ZIP/Postal code |
02115 |
Country |
USA |
|
|
Platform ID |
GPL571 |
Series (1) |
GSE43196 |
Genome-wide analyses of GATA6 occupancy and functions provide insights into its oncogenic mechanisms in human gastric cancer (microarray) |
|