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Sample GSM1059611 Query DataSets for GSM1059611
Status Public on Jan 01, 2016
Title Quadruple (SB/Tg/K5Cre/Bcat) Q548
Sample type RNA
 
Source name Mouse Tissue
Organism Mus musculus
Characteristics tissue: breast
genotype: Quadruple (SB/Tg/K5Cre/Bcat)
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix 3' IVT Express protocol from 100 ng total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix 3000 7G Scanner.
Description Gene expression data from mouse tissue
Data processing Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
 
Submission date Jan 03, 2013
Last update date Jan 01, 2016
Contact name Tuan Zea Tan
E-mail(s) csittz@nus.edu.sg
Organization name National University of Singapore
Department Cancer Science Institute Singapore
Street address 14 Medical Drive, #11-01, Singapore
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL1261
Series (1)
GSE43263 Sleeping Beauty Expression data from mouse

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
1415670_at 8.524708388
1415671_at 10.82775741
1415672_at 11.31470218
1415673_at 8.350253954
1415674_a_at 9.11410603
1415675_at 8.387996987
1415676_a_at 10.9413213
1415677_at 9.038254229
1415678_at 8.961310615
1415679_at 11.04532783
1415680_at 8.854362653
1415681_at 9.419179281
1415682_at 7.884737664
1415683_at 10.82300322
1415684_at 7.896822412
1415685_at 8.173015064
1415686_at 8.575284703
1415687_a_at 12.47997753
1415688_at 9.830647039
1415689_s_at 8.892971427

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1059611_AFG1138-19.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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