NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1059613 Query DataSets for GSM1059613
Status Public on Jan 01, 2016
Title Triple (SB/Tg/k5Cre) T257
Sample type RNA
 
Source name Mouse Tissue
Organism Mus musculus
Characteristics tissue: breast
genotype: Triple (SB/Tg/k5Cre)
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix 3' IVT Express protocol from 100 ng total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix 3000 7G Scanner.
Description Gene expression data from mouse tissue
Data processing Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
 
Submission date Jan 03, 2013
Last update date Jan 01, 2016
Contact name Tuan Zea Tan
E-mail(s) csittz@nus.edu.sg
Organization name National University of Singapore
Department Cancer Science Institute Singapore
Street address 14 Medical Drive, #11-01, Singapore
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL1261
Series (1)
GSE43263 Sleeping Beauty Expression data from mouse

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
1415670_at 8.769190806
1415671_at 10.25321038
1415672_at 10.87031264
1415673_at 7.7337167
1415674_a_at 9.212217034
1415675_at 8.660219446
1415676_a_at 10.92300335
1415677_at 8.55247761
1415678_at 9.318960487
1415679_at 11.30452498
1415680_at 9.038318714
1415681_at 9.577795318
1415682_at 7.672989376
1415683_at 10.90860492
1415684_at 8.397991264
1415685_at 8.61929541
1415686_at 9.064884072
1415687_a_at 12.37353492
1415688_at 9.786900521
1415689_s_at 8.520235806

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1059613_AFG1138-20.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap