NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1061 Query DataSets for GSM1061
Status Public on Feb 12, 2002
Title 1.5 mM diamide (50 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 50 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-93
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 142 83 522 320 294 60 26 31 355 386 .77 0 -.556 .554 89 78 1.776 1.47 .563 .68 .539 990 225 99 116 147 164 -.556
2 89 81 86 110 83 37 27 33 100 133 .801 0 .218 .718 32 44 1.036 .86 .965 1.163 .784 756 225 98 115 164 181 .218
3 90 79 3527 3425 3399 48 26 31 4096 4127 0 0 .216 .982 90 95 1.038 .861 .964 1.161 0 756 225 98 115 182 199 .216
4 87 78 85 99 72 45 27 33 86 119 .688 0 .017 .623 28 46 1.181 .988 .847 1.012 .533 756 225 98 115 199 216 .017
5 82 77 1348 1425 1399 39 26 31 1686 1717 .918 0 .323 1.042 84 86 .964 .8 1.038 1.251 .91 781 225 98 115 217 234 .323
6 81 76 44 60 34 34 26 31 41 72 .788 0 -.102 .607 27 38 1.294 1.073 .773 .932 .489 756 225 98 115 235 252 -.102
7 77 73 6 25 31 25 30 30 .023 0 .687 19 24 .011 756 225 98 115 252 269
8 77 71 1 27 2 29 25 30 3 33 .041 0 1.585 .425 20 26 .5 .333 2 3 .017 756 225 98 115 270 287 1.585
9 76 69 5 25 28 25 30 30 .066 0 .6 19 21 .03 756 225 98 115 287 304
10 84 71 6 27 2 39 25 30 3 33 -.03 0 -1 .467 22 25 3 2 .333 .5 -.014 771 225 98 115 305 322 -1
11 86 74 6 27 1 45 26 31 2 33 .028 0 -1.585 .674 19 23 6 3 .167 .333 .014 730 225 98 115 323 340 -1.585
12 98 74 6 25 52 26 31 30 .054 0 .28 23 20 .023 720 225 98 115 340 357
13 98 74 27 1 47 26 31 2 33 .15 0 .527 16 23 .066 720 225 98 115 358 375
14 86 78 8 26 1 36 25 30 1 31 .222 0 -3 .546 20 24 8 8 .125 .125 .108 720 225 98 115 375 392 -3
15 89 77 4 26 45 26 31 31 .081 0 .674 20 24 .039 746 225 98 115 393 410
16 79 70 7 29 4 39 25 30 5 35 -.011 0 -.485 .5 19 32 1.75 1.4 .571 .714 -.005 720 225 98 115 411 428 -.485
17 77 73 6 27 31 27 33 33 -.036 0 .645 20 22 -.017 720 225 98 115 428 445
18 79 74 2 31 3 34 28 34 3 37 -.131 0 .585 .633 20 26 .667 .667 1.5 1.5 -.066 731 225 98 115 446 463 .585
19 79 74 29 3 32 26 31 4 35 .022 0 .48 14 25 .01 720 225 98 115 463 480
20 81 76 3 29 2 30 27 33 2 35 .015 0 -.585 .486 16 24 1.5 1.5 .667 .667 .007 771 225 97 114 481 498 -.585

Total number of rows: 8832

Table truncated, full table size 1030 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap