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GEO accession:
Sample GSM106343
Query DataSets for GSM106343
Status
Public on Jul 01, 2006
Title
acidotic mouse OMCD
Sample type
SAGE
Anchor
Sau3A
Tag Count
19146
Tag Length
10
Source name
microdissected outer medullary collecting duct
Organism
Mus musculus
Characteristics
C57BL6/J
male
10 weeks
NH4Cl-loaded for 3 days
Extracted molecule
polyA RNA
Description
Library obtained from microdissected kidney outer medullary collecting duct from C57BL6/J mice after 3 days NH4Cl-diet. The library was generated using Sau3AI as anchoring enzyme. Data are provided after removal of linker derived sequences
Submission date
Apr 24, 2006
Last update date
Nov 19, 2008
Contact name
Alain Doucet
E-mail(s)
alain.doucet@bhdc.jussieu.fr
Phone
(33) 1 55 42 78 51
Organization name
Institut des Cordeliers
Department
Street address
City
Paris
ZIP/Postal code
75270
Country
France
Platform ID
GPL275
Series (1)
GSE4729
The kidney collecting duct acid-base regulon
Data table header descriptions
TAG
Tag sequence
COUNT
Tag occurrence
TPM
tags per million
Data table
TAG
COUNT
TPM
GTGGCAGTGG
549
28674.40
TGCTTCAATA
544
28413.25
AACTTATACA
315
16452.52
AAACAACCCA
298
15564.61
TTTATAATTT
275
14363.31
AACATTCCTT
169
8826.91
AACAAATCTC
157
8200.15
AAACTTTACC
108
5640.86
CAGAAGCAGT
104
5431.94
ACCGACCGCA
102
5327.48
TAACCATAGC
93
4857.41
TTGTGTCAGT
85
4439.57
CCACTGCACA
82
4282.88
TGACTCCCTC
77
4021.73
ATTTATTTCA
73
3812.81
CGAGCATCTT
69
3603.89
TTGTTGTGAG
68
3551.66
TGTGCAGGGT
66
3447.20
TTGTTTGCCA
63
3290.50
GCTTTCAGCA
59
3081.58
Total number of rows:
8847
Table truncated, full table size
166 Kbytes
.
Supplementary data files not provided
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