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Sample GSM106581 Query DataSets for GSM106581
Status Public on Aug 11, 2006
Title Yeast FAIRE_BY4741 #2_Oligo Array Rando4 (dye swap)
Sample type genomic
 
Channel 1
Source name fixed BY4741 #2
Organism Saccharomyces cerevisiae
Characteristics fixed BY4741 #2
Extracted molecule genomic DNA
Label Cy3
Label protocol samples and references were amplified using a random primed PCR-based method (see Bohlander et al., 1992)
 
Channel 2
Source name genomic unfixed BY4741
Organism Saccharomyces cerevisiae
Characteristics genomic unfixed BY4741
Extracted molecule genomic DNA
Label Cy5
Label protocol samples and references were amplified using a random primed PCR-based method (see Bohlander et al., 1992)
 
 
Scan protocol Images were acquired using a GenePix 4000B scanner and Genepix software (Axon Instruments)
Description FAIRE_BY4741 #2_Oligo Array Rando4 (dye swap)
Data processing The median of ratios data were obtained from Genepix GPR file. The log2 ratios were calculated from these data then block normalized to control for geographic variation across each array. Dye swap experiments were inverted.
 
Submission date Apr 25, 2006
Last update date Nov 27, 2006
Contact name Jason D Lieb
E-mail(s) jlieb@bio.unc.edu
Phone 919-842-3228
Organization name University of North Carolina at Chapel Hill
Department Department of Biology
Lab Jason Lieb
Street address 203 Fordham Hall
City Chapel Hill
State/province NC
ZIP/Postal code 27599-3280
Country USA
 
Platform ID GPL3703
Series (2)
GSE4721 Yeast FAIRE_BY4741 on Oligo Arrays
GSE4736 Yeast FAIRE Study_Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters.

Data table header descriptions
ID_REF
VALUE block normalized log2 (Median of Ratios)

Data table
ID_REF VALUE
493550 -0.351901586
493552 -0.817081701
493554 -0.833372576
493556 -0.401704571
493558 -0.656648328
493560 -0.43819904
493562 0.2432012
493564 0.073930316
493566 0.09625842
493568 0.519071775
493570 -0.142430197
493572 0.376911012
493574 0.901732861
493576 0.762730866
493578 0.645075374
493580 0.101312414
493582 -0.205469607
493584 -0.228235372
493586 0.204457045
493588 0.348898973

Total number of rows: 24960

Table truncated, full table size 451 Kbytes.




Supplementary file Size Download File type/resource
GSM106581.gpr.gz 2.6 Mb (ftp)(http) GPR

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