NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1075081 Query DataSets for GSM1075081
Status Public on Jun 01, 2017
Title Scn5adelta/+ mouse 2 left ventricle
Sample type RNA
 
Source name Mouse left ventricle
Organism Mus musculus
Characteristics genotype: Scn5adelta/+ KI/heterozygote/150-5KPQ-1507 del
genetic background: Swiss Agouti
age: 12 months
tissue: Left ventricle + Septum
Growth protocol 12 months old mice
Extracted molecule total RNA
Extraction protocol RNA was extracted with Rneasy fibrous tissue mini ki (Qiagen with DNase I treatment on column) in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description biological replicate 2
Data processing The data were normalised using cubic spline normalization with Geome Studio Software (Illumina, 2010).Differential gene expression was assessed employing the Illumina custom algorithm
 
Submission date Jan 31, 2013
Last update date Jun 01, 2017
Contact name Ilaria Piccini
E-mail(s) ilaria.piccini@ukmuenster.de
Organization name UKM
Street address Albert-Schweitzer-Campus 1
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE43967 Selective increase in late sodium current leads to left ventricular fibrosis with ageing and both excessive hypertrophy and fibrosis with pressure overload in a knock-in murine model

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
LV dKPQ2 Detection Pval

Data table
ID_REF VALUE LV dKPQ2 Detection Pval
ILMN_1248788 1.404817 0.3107769
ILMN_2707227 1.69789 0.2819549
ILMN_2896528 2943.801 0
ILMN_2721178 415.2589 0
ILMN_1227723 168.3875 0
ILMN_3033922 300.5211 0
ILMN_3092673 1679.392 0
ILMN_2730714 2858.058 0
ILMN_3162224 920.1852 0
ILMN_2816356 16.2324 0.002506266
ILMN_2808939 55.37793 0
ILMN_2634564 70.0573 0
ILMN_1216623 89.53487 0
ILMN_1215157 161.4142 0
ILMN_1228777 -1.887821 0.8295739
ILMN_2737647 0.9273774 0.3746867
ILMN_1216425 1.525499 0.302005
ILMN_2734484 200.513 0
ILMN_2652961 -0.293254 0.575188
ILMN_2952292 10.0081 0.01879699

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.