|
Status |
Public on Feb 03, 2013 |
Title |
Blastocyst 3 |
Sample type |
SRA |
|
|
Source name |
Ovary
|
Organism |
Bos taurus |
Characteristics |
tissue: blastocyst
|
Growth protocol |
24 hour maturation following follicular aspiration of oocyte; IVF; and then culture in KSOM+BSA for 7 days
|
Extracted molecule |
total RNA |
Extraction protocol |
Arcturus Picopure (RNA) Nugen Ovation V1 (cDNA) followed by Nugen Encore (Library)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
Filtering for quality by Galaxy FastQC RNA-Seq analysis using CLC Genomics Workbench Ver. 4.7 Genome_build: Btau 4.0, Btau4.2 and UMD3.1 Supplementary_files_format_and_content: Ensembl Gene ID and RPKM
|
|
|
Submission date |
Feb 01, 2013 |
Last update date |
May 15, 2019 |
Contact name |
James Lee Chitwood |
E-mail(s) |
jlchitwood@ucdavis.edu
|
Organization name |
University of California, Davis
|
Department |
Animal Science
|
Street address |
1 Shields Avenue
|
City |
Davis |
State/province |
CA |
ZIP/Postal code |
95691 |
Country |
USA |
|
|
Platform ID |
GPL15750 |
Series (1) |
GSE44023 |
RNA-seq analysis of single bovine blastocysts |
|
Relations |
SRA |
SRX222007 |
BioSample |
SAMN01909099 |