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GEO accession:
Sample GSM108098
Query DataSets for GSM108098
Status
Public on Jul 25, 2006
Title
Jurkat with Nef Biological Replicate 3
Sample type
RNA
Source name
Jurkat cell line
Organism
Homo sapiens
Characteristics
Jurkat cell line transfected with SIV Nef
Treatment protocol
10 micromolar ponasterone A
Extracted molecule
total RNA
Label
biotin
Description
Gene expression data Jurkat cell line
Data processing
The data were analyzed with Gene Chip Operating System (GCOS) using Affymetrix default analysis settings and global scaling as normalization method
Submission date
May 05, 2006
Last update date
Jul 25, 2006
Contact name
Michael George
E-mail(s)
mdgeorge@ucdavis.edu
Organization name
University of California, Davis
Department
Medical Microbiology and Immunology
Street address
451 Health Sciences Drive
City
Davis
State/province
CA
ZIP/Postal code
95616
Country
USA
Platform ID
GPL570
Series (1)
GSE4785
Nef transfection of Jurkat T cells
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
224.2
P
0.000446
AFFX-BioB-M_at
345.2
P
0.000044
AFFX-BioB-3_at
197.9
P
0.000225
AFFX-BioC-5_at
473.1
P
0.00006
AFFX-BioC-3_at
477.6
P
0.000044
AFFX-BioDn-5_at
552.7
P
0.000044
AFFX-BioDn-3_at
2396.4
P
0.00006
AFFX-CreX-5_at
5956.4
P
0.000052
AFFX-CreX-3_at
6809.4
P
0.000044
AFFX-DapX-5_at
8.8
A
0.327079
AFFX-DapX-M_at
13.4
A
0.5
AFFX-DapX-3_at
1.1
A
0.960339
AFFX-LysX-5_at
6.1
A
0.5
AFFX-LysX-M_at
3
A
0.804734
AFFX-LysX-3_at
8.5
A
0.239063
AFFX-PheX-5_at
2
A
0.876428
AFFX-PheX-M_at
0.9
A
0.937071
AFFX-PheX-3_at
11.6
A
0.455413
AFFX-ThrX-5_at
2
A
0.843268
AFFX-ThrX-M_at
1.7
A
0.783476
Total number of rows:
54675
Table truncated, full table size
1408 Kbytes
.
Supplementary data files not provided
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