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Sample GSM1085 Query DataSets for GSM1085
Status Public on Feb 12, 2002
Title 100 microM CuSO4 30 min
Sample type RNA
 
Channel 1
Source name CM66J low Cu++
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CM66J 100 microM CuSO4 30 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f73a2c
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE26 Copper regulon in S. cerevisiae

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 204 13 63 185 172 1014 13 15 200 215 .94 -100 .95 62 59 .366 .315 2.73 3.175 4.4 938 208 63 79 79 95 1.667
2 17 11 9 23 13 18 10 11 15 26 .7 -100 1.76 45 47 .692 .6 1.444 1.667 1.1 816 208 63 79 98 114 .737
3 17 10 92 167 159 24 8 9 185 194 .59 -100 1.33 79 79 .579 .497 1.728 2.011 1.46 841 208 61 77 118 134 1.008
4 60 12 75 134 123 186 11 12 143 155 .81 -100 1.45 74 72 .61 .524 1.64 1.907 1.65 687 200 63 79 136 152 .931
5 80 14 137 205 188 246 17 19 219 238 .75 -100 1.29 97 98 .729 .626 1.372 1.599 1.36 643 312 61 82 151 172 .677
6 51 15 65 76 61 111 15 17 71 88 .86 -100 .87 97 89 1.066 .915 .938 1.092 .89 698 208 63 79 170 186 .127
7 31 10 25 49 39 53 10 11 45 56 .97 -100 1.07 33 36 .641 .556 1.56 1.8 1.85 749 208 63 79 188 204 .848
8 19 8 1 11 4 29 7 8 4 12 .67 -100 1.82 25 38 .25 .25 4 4 1.11 724 208 63 79 205 221 2
9 19 8 33 131 123 24 8 9 143 152 .91 -100 2.61 34 33 .268 .231 3.727 4.333 3.58 720 208 63 79 222 238 2.115
10 47 9 2 18 9 99 9 10 10 20 .68 -100 2.7 22 27 .222 .2 4.5 5 1.6 770 208 62 78 239 255 2.322
11 53 9 14 5 123 9 10 6 16 .66 -100 1.27 24 25 0 3.95 760 208 62 78 257 273
12 71 11 20 57 47 223 10 11 55 66 .89 -100 1.75 24 27 .426 .364 2.35 2.75 2.36 731 208 62 78 274 290 1.459
13 44 10 24 69 61 148 8 9 71 80 .73 -100 2.14 28 38 .393 .338 2.542 2.958 1.52 731 208 62 78 291 307 1.565
14 13 8 2 10 3 20 7 8 3 11 .74 -100 .98 25 30 .667 .667 1.5 1.5 1.3 737 208 62 78 308 324 .585
15 9 7 6 10 6 6 6 .55 -100 1.18 26 28 0 .61 740 200 62 78 326 342
16 24 7 87 270 265 25 5 5 308 313 .95 -100 2.45 39 49 .328 .282 3.046 3.54 2.73 721 198 62 78 343 359 1.824
17 24 8 1 7 1 27 6 6 2 8 .29 -100 1.18 23 31 1 .5 1 2 .27 749 196 62 78 360 376 1
18 15 8 1 10 4 23 6 6 5 11 .6 -100 1.37 30 36 .25 .2 4 5 1.26 806 208 60 76 379 395 2.322
19 15 8 12 5 23 7 8 5 13 .34 -100 1.47 25 31 0 1.94 787 208 60 76 396 412
20 14 8 139 679 672 16 7 8 781 789 .98 -100 3.11 33 48 .207 .178 4.835 5.619 4.97 785 204 60 76 414 430 2.49

Total number of rows: 8832

Table truncated, full table size 951 Kbytes.




Supplementary data files not provided
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