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Sample GSM1088 Query DataSets for GSM1088
Status Public on Feb 12, 2002
Title yap59
Sample type RNA
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name YAP1 overexpression
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = yap59
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT
1 1848 1623 1966 970 996 1660 1616 3276 .92 0 -.006 0 0 1.673 1.004 .598 .996 .96 30 40 52 62
2 1922 1782 2106 1103 1003 1671 1839 3510 .94 0 .045 0 0 1.616 .969 .619 1.032 .94 30 40 63 73
3 1930 1679 2013 1011 1002 1670 1685 3355 .91 0 .005 0 0 1.661 .996 .602 1.004 .94 30 40 74 84
4 1838 235 1091 105 986 1643 175 1818 .08 0 -.425 0 0 2.238 1.343 .447 .745 .11 30 40 85 95
5 1867 705 2148 1126 1022 1703 1877 3580 .89 0 1.413 0 0 .626 .376 1.597 2.662 .3 30 40 96 106
6 1891 362 1172 166 1006 1676 277 1953 .78 0 -.386 0 0 2.181 1.307 .459 .765 1.14 30 40 107 117
7 1913 16048 17524 16469 1055 1758 27448 29206 .94 0 .774 0 0 .974 .585 1.026 1.71 .58 30 40 118 128
8 1881 2371 2231 1199 1032 1720 1998 3718 .88 0 -.247 0 0 1.977 1.187 .506 .843 1.06 30 40 129 139
9 1908 246 1101 113 988 1646 189 1835 .09 0 -.38 0 0 2.177 1.302 .459 .768 .12 30 40 140 150
10 1854 286 1105 108 997 1661 180 1841 .06 0 -.668 0 0 2.648 1.589 .378 .629 .12 30 40 151 161
11 1764 393 1140 124 1016 1693 207 1900 .3 0 -.925 0 0 3.169 1.899 .316 .527 .76 30 40 162 172
12 1653 313 1124 120 1004 1673 200 1873 .08 0 -.646 0 0 2.608 1.565 .383 .639 .16 30 40 173 183
13 1702 8056 7380 6338 1042 1736 10564 12300 .93 0 .391 0 0 1.271 .763 .787 1.311 .76 30 40 184 194
14 1744 3639 4489 3439 1050 1750 5731 7481 .93 0 .655 0 0 1.058 .635 .945 1.575 .6 30 40 196 206
15 1696 1442 1791 754 1037 1728 1257 2985 .93 0 -.198 0 0 1.912 1.147 .523 .872 1.23 30 40 207 217
16 1654 6499 5501 4428 1073 1788 7380 9168 .72 0 .183 0 0 1.468 .881 .681 1.136 .65 30 40 218 228
17 1474 2182 2796 1778 1018 1696 2964 4660 .87 0 .442 0 0 1.227 .736 .815 1.358 .69 30 40 229 239
18 1415 1851 2446 1447 999 1665 2411 4076 .95 0 .381 0 0 1.279 .768 .782 1.303 .78 30 40 240 250
19 1346 2362 3962 2947 1015 1691 4912 6603 .88 0 1.056 0 0 .801 .481 1.248 2.08 .46 30 40 251 261
20 1274 1565 4776 3767 1009 1681 6279 7960 .87 0 2.004 0 0 .415 .249 2.407 4.012 .22 30 40 262 272

Total number of rows: 6400

Table truncated, full table size 632 Kbytes.




Supplementary data files not provided
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