|
| Status |
Public on Jun 21, 2013 |
| Title |
ChorionicVilli_EOPET_13 (methylation) |
| Sample type |
genomic |
| |
|
| Source name |
placental chorionic villus
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: placental chorionic villus
condition: EOPET
gestational age (weeks): 28.56
fetus gender: Male
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was purified using the Dneasy Blood and Tissue kit (Qiagen) followed by bisufite conversion using the EZ DNA methylation kit (Zymo) following manufacturer's protocols.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Illumina HumanMethylation450 BeadChip Protocol
|
| |
|
| Hybridization protocol |
Illumina HumanMethylation450 BeadChip Protocol
|
| Scan protocol |
Arrays were imaged using Illumina iScan on a two-color channel
|
| Description |
Sample name: PM80
|
| Data processing |
GenomeStudio 2011.1 software and R version 2.14.0
Unmethylated and methylated signal intensities matrix linked as supplementary file on the Series record.
|
| |
|
| Submission date |
Feb 26, 2013 |
| Last update date |
May 17, 2016 |
| Contact name |
Wendy Robinson |
| E-mail(s) |
wprobinsonlab@gmail.com
|
| Organization name |
University of British Columbia
|
| Department |
Medical Genetics
|
| Lab |
Robinosn
|
| Street address |
950 W 28th Ave
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V5Z 4H4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE44667 |
DNA methylation in Early Onset Preeclamptic placentas |
| GSE44712 |
Early-Onset Preeclampsia Placentas and Controls |
|
