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Sample GSM1089 Query DataSets for GSM1089
Status Public on Feb 12, 2002
Title 100 microM CuSO4 30 min (B)
Sample type RNA
 
Channel 1
Source name CM66J low Cu++
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CM66J 100 microM CuSO4 30 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f84cup
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE26 Copper regulon in S. cerevisiae

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 76 75 344 600 486 114 114 92 395 487 .93 0 .199 1.15 73 71 .708 .871 1.413 1.148 1.69 1002 208 70 86 91 107 .199
2 80 75 51 187 73 121 114 92 60 152 .64 0 .234 1.39 50 49 .699 .85 1.431 1.176 .79 840 208 70 86 110 126 .234
3 101 80 1137 1765 1645 150 120 97 1337 1434 .92 0 .234 1.2 88 88 .691 .85 1.447 1.176 1.59 806 208 70 86 127 143 .234
4 124 82 111 289 166 188 123 100 134 234 .97 0 .272 1.2 74 78 .669 .828 1.495 1.207 1.89 823 208 70 86 143 159 .272
5 106 80 978 1639 1518 165 121 98 1234 1332 .87 0 .335 1.28 75 81 .644 .793 1.552 1.262 1.62 871 208 70 86 162 178 .335
6 81 79 15 149 28 125 121 98 23 121 .67 0 .617 1.15 14 13 .536 .652 1.867 1.533 1.49 858 208 70 86 182 198 .617
7 80 79 -1 121 1 123 120 97 1 98 .36 0 1.36 1 0 0 .79 819 208 70 86 200 216
8 80 80 1 119 -1 122 120 97 -1 96 .36 0 .59 1 0 0 .49 813 208 70 86 217 233
9 80 80 -3 119 122 119 96 96 .26 0 1.45 0 0 0 .5 815 208 70 86 234 250
10 82 80 -1 120 124 120 97 97 .41 0 .81 0 0 0 .57 827 208 70 86 251 267
11 83 81 123 125 123 100 100 .48 0 .52 1 0 0 .48 823 208 70 86 269 285
12 82 81 -2 121 -1 123 122 99 -1 98 .35 0 1.11 0 0 0 .38 810 208 70 86 286 302
13 89 80 122 1 126 121 98 1 99 .94 0 1.05 0 0 0 .65 815 208 70 86 303 319
14 88 79 122 126 122 99 99 .94 0 1 0 0 0 .65 816 208 70 86 320 336
15 84 80 -2 123 124 123 100 100 .35 0 .92 1 0 0 .35 821 208 70 86 338 354
16 84 81 -2 122 124 122 99 99 .43 0 .78 0 0 0 .46 807 208 70 86 355 371
17 83 79 -3 117 -2 127 119 96 -1 95 .78 0 .52 0 0 0 1.49 807 208 70 86 372 388
18 81 78 3 127 10 124 117 95 8 103 .83 0 1.415 .94 3 3 .3 .375 3.333 2.667 1.75 841 208 70 86 389 405 1.415
19 78 78 -3 115 -2 118 117 95 -2 93 .36 0 .92 0 0 0 .46 842 208 70 86 407 423
20 80 77 3 119 2 119 117 95 1 96 .63 0 -1.585 .87 1 0 1.5 3 .667 .333 .82 821 208 70 86 424 440 -1.585

Total number of rows: 8832

Table truncated, full table size 1036 Kbytes.




Supplementary data files not provided
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