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Sample GSM108944 Query DataSets for GSM108944
Status Public on Jun 01, 2006
Title Amersham-MRP1-4
Sample type RNA
 
Source name Adult mouse retina
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from a pool of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ÂșC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP1 technical replicate 4
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date May 13, 2006
Last update date May 17, 2006
Contact name Winston Patrick Kuo
E-mail(s) wkuo@genetics.med.harvard.edu
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (3)
GSE4835 GE Healthcare (Amersham) experiments for cross-platform study including site 2 data
GSE4854 Cross-platform study
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 128.3626943 0.231232968 EMPTY
2 23264.65398 41.90902209 GOOD
3 991.6536585 1.786368072 GOOD
4 3662.66055 6.59792843 GOOD
5 17.81606218 0.032093911 EMPTY
6 3114.659898 5.610758303 GOOD
7 3363.994764 6.059910928 GOOD
8 22.55440415 0.040629576 EMPTY
9 7685.409692 13.8445216 GOOD
10 454.6522843 0.819012079 GOOD
11 14421.13223 25.97827372 GOOD
12 137.1145833 0.246998649 GOOD
13 10949.63717 19.72471141 GOOD
14 7748.885845 13.95886774 GOOD
15 595.2742857 1.072329002 GOOD
16 2496.248804 4.496750579 GOOD
17 909.4255319 1.638242062 GOOD
18 4944.228448 8.90654894 GOOD
19 27.30923695 0.049194947 EMPTY
20 19.01041667 0.034245425 EMPTY

Total number of rows: 10500

Table truncated, full table size 346 Kbytes.




Supplementary file Size Download File type/resource
GSM108944.tif.gz 15.0 Mb (ftp)(http) TIFF

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