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Sample GSM109326 Query DataSets for GSM109326
Status Public on May 22, 2006
Title H3K4Me3_gastrula_1_Slide2
Sample type genomic
 
Channel 1
Source name IP H3K4Me3
Organism Danio rerio
Characteristics Zebrafish Gastrula
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Whole Cell Extract
Organism Danio rerio
Characteristics Control Whole Cell Extract
Extracted molecule genomic DNA
Label Cy5
 
 
Description IPed H3K4Me3 versus Control Whole Cell Extract Replicate 1
Data processing None; Raw Data files
 
Submission date May 18, 2006
Last update date May 22, 2006
Contact name Elizabeth Herbolsheimer
E-mail(s) herbolsheimer@wi.mit.edu
Organization name Whitehead Institute
Lab Young Lab
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02140
Country USA
 
Platform ID GPL3767
Series (1)
GSE4863 Zebrafish promoter microarrays identify actively transcribed embryonic genes

Data table header descriptions
ID_REF ID reference to platfrom
VALUE raw data files; no processed value (dummy column)
MetaColumn placement on array MetaColumn
MetaRow Placement on array MetaRow
Column Placement on array Column
Row Placement on array Row
Name Name of Probe
AID Agilent ID
B635 B635
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
Ratio of Medians (635/532) Ratio of Medians (635/532)
Ratio of Means (635/532) Ratio of Means (635/532)
Median of Ratios (635/532) Median of Ratios (635/532)
Mean of Ratios (635/532) Mean of Ratios (635/532)
Ratios SD (635/532) Ratios SD (635/532)
Sum of Medians (635/532) Sum of Medians (635/532)
Sum of Means (635/532) Sum of Means (635/532)
Log Ratio (635/532) Log Ratio (635/532)
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
F635 Total Intensity F635 Total Intensity
F532 Total Intensity F532 Total Intensity
Flags Flags

Data table
ID_REF VALUE MetaColumn MetaRow Column Row Name AID B635 B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity Flags
1 null 1 1 430 103 BrightCorner Pro25G_T10_Pro25G 40 40 45 24 3401 3212 621 0.05 0.051 0.051 0.052 1.141 3537 3343 -4.326 168 3369 163 3180 6506 102783 0
2 null 1 1 430 102 BrightCorner Pro25G_T10_Pro25G 40 40 40 4 3416 2830 1184 0.05 0.054 0.055 0.06 1.383 3554 2949 -4.315 170 3384 151 2798 9922 147144 0
3 null 1 1 430 101 3xSLv1 (-)3xSLv1 40 40 40 3 87 87 9 0.564 0.582 0.552 0.577 1.184 86 87 -0.827 31 55 32 55 2319 2797 0
4 null 1 1 430 100 Dr_0604_4_8299601+60 WH_07_P0060909 40 40 42 10 111 99 29 1.367 1.507 1.539 1.585 1.318 187 168 0.451 108 79 101 67 7340 5169 0
5 null 1 1 430 99 Dr_0604_Un_19520004-60 WH_07_P0050678 41 41 68 98 612 545 197 1.721 1.795 1.776 1.895 1.189 1578 1434 0.783 998 580 921 513 30799 17425 0
6 null 1 1 430 98 Dr_0604_5_38199913+60 WH_07_P0067569 41 41 70 112 442 404 101 1.929 2.049 2.007 2.119 1.175 1198 1131 0.948 789 409 760 371 25644 12921 0
7 null 1 1 430 97 Dr_0604_NA_227407957+60 WH_07_P0078407 40 40 48 31 177 168 31 1.786 1.816 1.862 1.844 1.152 404 383 0.837 259 145 247 136 9185 5382 0
8 null 1 1 430 96 Dr_0604_5_21232891+60 WH_07_P0066809 40 40 40 5 178 171 43 2.856 2.784 2.816 2.859 1.159 563 526 1.514 417 146 387 139 22218 8866 0
9 null 1 1 430 95 Dr_0604_9_32119804+60 WH_07_P0065203 40 40 41 4 83 80 12 0.647 0.646 0.682 0.643 1.36 84 79 -0.628 33 51 31 48 2285 2553 0
10 null 1 1 430 94 Dr_0604_NA_35611477-60 WH_07_P0070238 41 41 43 13 138 131 21 1.105 1.143 1.125 1.149 1.148 221 210 0.144 116 105 112 98 4882 4196 0
11 null 1 1 430 93 Dr_0604_Un_50230764-60 WH_07_P0052074 41 41 123 298 168 151 38 14.207 15.475 14.939 16.664 1.357 2053 1944 3.829 1918 135 1826 118 59748 4816 0
12 null 1 1 430 92 Dr_0604_NA_40599708-60 WH_07_P0070438 40 40 41 7 223 191 67 3.326 3.411 3.462 3.629 1.237 822 697 1.734 632 190 539 158 30091 9908 0
13 null 1 1 430 91 3xSLv1 (-)3xSLv1 40 40 41 5 88 80 19 0.429 0.479 0.489 0.506 1.513 80 71 -1.222 24 56 23 48 3298 4168 0
14 null 1 1 430 90 Dr_0604_2_12186747+60 WH_07_P0047471 40 40 42 8 819 728 211 2.721 2.793 2.77 2.88 1.3 2925 2636 1.444 2139 786 1941 695 102993 37857 0
15 null 1 1 430 89 Dr_0604_5_40971371-60 WH_07_P0067818 41 41 42 11 755 658 205 3.001 3.134 3.088 3.314 1.234 2893 2588 1.586 2170 723 1962 626 104156 34191 0
16 null 1 1 430 88 Gene_desert_5-39 WH_07_P8000557 41 41 41 7 229 205 58 1.332 1.378 1.372 1.42 1.177 457 409 0.413 261 196 237 172 14469 10671 0
17 null 1 1 430 87 Dr_0604_2_40726050+60 WH_07_P0049061 40 40 41 4 92 90 9 0.85 0.897 0.854 0.881 1.176 111 110 -0.234 51 60 52 58 2928 2895 0
18 null 1 1 430 86 Dr_0604_NA_227237000-60 WH_07_P0078400 41 41 278 1158 643 570 169 2.051 2.14 2.111 2.24 1.233 1861 1686 1.036 1251 610 1149 537 61866 29629 0
19 null 1 1 430 85 Dr_0604_3_26570052+60 WH_07_P0043703 41 41 63 198 391 334 116 13.964 15.103 14.696 16.458 1.32 5357 4847 3.804 4999 358 4546 301 238523 17370 0
20 null 1 1 430 84 Dr_0604_Un_161187278-60 WH_07_P0056182 41 41 41 4 380 346 84 1.463 1.522 1.514 1.551 1.159 857 792 0.549 509 348 478 314 26970 17994 0

Total number of rows: 44290

Table truncated, full table size 6624 Kbytes.




Supplementary data files not provided

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