|
Status |
Public on Sep 27, 2013 |
Title |
genomic DNA HCC tissue [0846-01E_T5] |
Sample type |
genomic |
|
|
Source name |
genomic DNA HCC tissue
|
Organism |
Homo sapiens |
Characteristics |
gender: Female disease state: HCC tissue source: CHTN
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Blood and Tissue Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
diseased liver
|
Data processing |
BeadStudio software v3.2 matrix signal intensities value definition: Unmethylated and methylated signal intensities
|
|
|
Submission date |
Mar 05, 2013 |
Last update date |
Sep 27, 2013 |
Contact name |
Jinyu Li |
E-mail(s) |
jinyu.li.1@stonybrook.edu
|
Organization name |
Stony Brook University
|
Department |
Cancer Center
|
Street address |
101 Nicolls Rd
|
City |
Stony Brook |
State/province |
NY |
ZIP/Postal code |
11794 |
Country |
USA |
|
|
Platform ID |
GPL8490 |
Series (1) |
GSE44909 |
Epigenome analysis of HCC samples with paired adjacent tissue |
|