|
| Status |
Public on Sep 27, 2013 |
| Title |
B92 |
| Sample type |
genomic |
| |
|
| Source name |
high-grade dysplastic nodule
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: high-grade dysplastic nodule
|
| Treatment protocol |
na
|
| Growth protocol |
na
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted by using QIAcube nucleic acid isolation system (Qiagen) according to manufacturer's instruction.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Refer to the Illumina beadarray Assay System Manual
|
| |
|
| Hybridization protocol |
Refer to the Illumina beadarray Assay System Manual
|
| Scan protocol |
Refer to the Illumina beadarray Assay System Manual
|
| Description |
SentrixID_SentrixPosition: 4835443033_J
|
| Data processing |
For each probe, replicate bead mesurements were averaged after removing outliers, and normalized DNA methylation level (beta-value) was computed by Genome Studio software (ver.3, Illumina).
|
| |
|
| Submission date |
Mar 08, 2013 |
| Last update date |
Sep 27, 2013 |
| Contact name |
Yujin Hoshida |
| Organization name |
University of Texas Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE44970 |
Genome-wide DNA methylation profiles of human hepatocellular carcinoma |
|
