|
Status |
Public on Sep 27, 2013 |
Title |
NY10 |
Sample type |
genomic |
|
|
Source name |
low-grade dysplastic nodule
|
Organism |
Homo sapiens |
Characteristics |
sample type: low-grade dysplastic nodule
|
Treatment protocol |
na
|
Growth protocol |
na
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted by using QIAcube nucleic acid isolation system (Qiagen) according to manufacturer's instruction.
|
Label |
Cy5 and Cy3
|
Label protocol |
Refer to the Illumina beadarray Assay System Manual
|
|
|
Hybridization protocol |
Refer to the Illumina beadarray Assay System Manual
|
Scan protocol |
Refer to the Illumina beadarray Assay System Manual
|
Description |
SentrixID_SentrixPosition: 4835443035_C
|
Data processing |
For each probe, replicate bead mesurements were averaged after removing outliers, and normalized DNA methylation level (beta-value) was computed by Genome Studio software (ver.3, Illumina).
|
|
|
Submission date |
Mar 08, 2013 |
Last update date |
Sep 27, 2013 |
Contact name |
Yujin Hoshida |
Organization name |
University of Texas Southwestern Medical Center
|
Street address |
5323 Harry Hines Blvd
|
City |
Dallas |
State/province |
TX |
ZIP/Postal code |
75390 |
Country |
USA |
|
|
Platform ID |
GPL8490 |
Series (1) |
GSE44970 |
Genome-wide DNA methylation profiles of human hepatocellular carcinoma |
|