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Sample GSM1096 Query DataSets for GSM1096
Status Public on Feb 12, 2002
Title cdc15 180 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 180 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n103
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 331 328 11329 400 32 371 368 566 49 615 0 0 -7.853 .009 46 2 354.031 231.204 .003 .004 0 1291 45 22 30 64 72 -7.853
2 334 336 10063 395 27 371 368 566 42 608 0 0 -7.904 .006 48 6 372.704 239.595 .003 .004 0 1176 45 21 29 73 81 -7.904
3 337 336 3471 389 21 371 368 566 32 598 .772 0 -6.761 .667 33 6 165.286 108.469 .006 .009 .007 1061 45 21 29 82 90 -6.761
4 350 336 47 404 28 433 376 578 44 622 .89 0 -.095 .804 8 6 1.679 1.068 .596 .936 .694 1061 45 21 29 91 99 -.095
5 355 336 118 548 172 439 376 578 265 843 .887 0 1.167 .667 17 15 .686 .445 1.458 2.246 1.648 1061 45 21 29 100 108 1.167
6 354 336 1190 5347 4971 439 376 578 7648 8226 4.391 0 2.684 2 22 22 .239 .156 4.177 6.427 3.535 1061 45 21 29 109 117 2.684
7 573 344 89 506 130 1052 376 578 200 778 .831 0 1.168 1 13 11 .685 .445 1.461 2.247 1.841 1061 45 21 29 118 126 1.168
8 606 344 9 379 3 1180 376 578 5 583 .502 0 -.848 1.071 0 0 3 1.8 .333 .556 .537 1061 45 21 29 127 135 -.848
9 604 344 5 374 1175 376 578 575 .396 0 1 0 2 .517 1061 45 21 29 136 144
10 604 344 50 434 58 1175 376 578 90 668 .911 0 .848 .91 8 6 .862 .556 1.16 1.8 1.093 1061 45 21 29 145 153 .848
11 608 344 55 441 65 1180 376 578 100 678 .924 0 .862 .906 8 6 .846 .55 1.182 1.818 1.145 1056 45 21 29 154 162 .862
12 342 344 12 372 374 376 578 572 .209 0 .75 0 0 .198 1051 45 21 29 163 171
13 341 336 330 666 290 372 376 578 447 1025 .967 0 .438 .667 20 22 1.138 .738 .879 1.355 .977 1074 45 20 28 172 180 .438
14 341 344 44 422 46 372 376 578 71 649 .957 0 .69 1 6 4 .957 .62 1.045 1.614 .918 1067 45 20 28 181 189 .69
15 339 336 21 390 22 370 368 566 34 600 .649 0 .695 1.8 2 2 .955 .618 1.048 1.619 .521 1061 45 20 28 190 198 .695
16 342 336 54 411 43 380 368 566 66 632 .887 0 .29 .816 8 8 1.256 .818 .796 1.222 .723 1061 45 20 28 199 207 .29
17 366 336 39 406 38 434 368 566 59 625 .893 0 .597 1 8 6 1.026 .661 .974 1.513 .943 1061 45 20 28 208 216 .597
18 365 336 50 401 33 433 368 566 51 617 .964 0 .029 1 6 6 1.515 .98 .66 1.02 .682 1061 45 20 28 217 225 .029
19 364 336 17 380 12 433 368 566 19 585 .768 0 .16 .714 2 4 1.417 .895 .706 1.118 1.146 1061 45 20 28 226 234 .16
20 363 336 68 433 65 432 368 566 100 666 .93 0 .556 1 8 8 1.046 .68 .956 1.471 .971 1061 45 20 28 235 243 .556

Total number of rows: 8832

Table truncated, full table size 1000 Kbytes.




Supplementary data files not provided
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