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Sample GSM1098 Query DataSets for GSM1098
Status Public on Feb 12, 2002
Title cdc15 230 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 230 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n100
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 310 296 9802 301 45 260 256 366 64 430 0 0 -7.259 .035 37 15 217.822 153.156 .005 .007 0 1291 45 57 65 62 70 -7.259
2 312 296 8838 303 47 261 256 366 67 433 0 0 -7.043 .015 40 17 188.043 131.91 .005 .008 0 1176 45 56 64 71 79 -7.043
3 302 296 3310 289 33 260 256 366 47 413 .835 0 -6.138 .333 33 11 100.303 70.426 .01 .014 .01 1061 45 56 64 80 88 -6.138
4 299 296 51 329 73 260 256 366 104 470 .858 0 1.028 1.5 11 11 .699 .49 1.431 2.039 1.233 1061 45 56 64 89 97 1.028
5 299 296 112 402 146 261 256 366 208 574 .953 0 .893 1.1 15 20 .767 .538 1.304 1.857 1.218 1061 45 56 64 98 106 .893
6 298 296 63 352 96 259 256 366 137 503 .813 0 1.121 1.4 11 11 .656 .46 1.524 2.175 1.087 1061 45 56 64 107 115 1.121
7 296 296 125 385 129 262 256 366 184 550 .875 0 .558 .86 17 13 .969 .679 1.032 1.472 1.006 1061 45 56 64 116 124 .558
8 294 296 74 361 105 261 256 366 150 516 .9 0 1.019 .833 8 13 .705 .493 1.419 2.027 .977 1061 45 56 64 125 133 1.019
9 294 296 92 368 112 260 256 366 160 526 .916 0 .798 1 15 15 .821 .575 1.217 1.739 1.062 1061 45 56 64 134 142 .798
10 294 296 33 312 56 260 256 366 80 446 .862 0 1.278 1.667 4 6 .589 .413 1.697 2.424 1.232 1061 45 56 64 143 151 1.278
11 292 288 73 352 96 257 256 366 137 503 .882 0 .908 1.333 11 13 .76 .533 1.315 1.877 1.295 1061 45 56 64 152 160 .908
12 293 288 3 265 9 257 256 366 13 379 .032 0 2.115 1.25 0 0 .333 .231 3 4.333 .039 1061 45 56 64 161 169 2.115
13 293 296 167 433 177 258 256 366 253 619 .887 0 .599 1.211 20 17 .944 .66 1.06 1.515 .954 1061 45 56 64 170 178 .599
14 304 296 16 267 11 270 256 366 15 381 .25 0 -.093 1 2 2 1.455 1.067 .688 .938 .221 1061 45 56 64 179 187 -.093
15 304 296 49 360 104 271 256 366 148 514 .852 0 1.595 1 6 8 .471 .331 2.122 3.02 1.262 1061 45 56 64 188 196 1.595
16 303 296 51 342 86 271 256 366 123 489 .893 0 1.27 1.333 8 11 .593 .415 1.686 2.412 1.501 1061 45 56 64 197 205 1.27
17 303 296 40 307 43 272 264 377 62 439 .947 0 .632 1.328 6 6 .93 .645 1.075 1.55 1.485 1061 45 56 64 206 214 .632
18 297 296 67 376 112 264 264 377 160 537 .916 0 1.256 1 8 13 .598 .419 1.672 2.388 1.71 1061 45 56 64 215 223 1.256
19 294 296 31 318 54 260 264 377 77 454 .79 0 1.313 2.25 4 4 .574 .403 1.742 2.484 1.3 1061 45 56 64 224 232 1.313
20 294 296 11 276 20 259 256 366 28 394 .737 0 1.348 .9 4 4 .55 .393 1.818 2.545 1.201 1061 45 56 64 233 241 1.348

Total number of rows: 8832

Table truncated, full table size 1011 Kbytes.




Supplementary data files not provided
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