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Sample GSM1101 Query DataSets for GSM1101
Status Public on Feb 12, 2002
Title 1 mM Menadione (30 min) redo
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 30 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-3
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL64
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 748 688 1208 1165 773 417 392 417 822 1239 .85 0 -.555 .73 32 40 1.563 1.47 .64 .68 .507 1221 52 20 28 79 87 -.555
2 766 688 11 413 21 419 392 417 22 439 .537 0 1 1.25 3 7 .524 .5 1.909 2 .334 1073 52 20 28 87 95 1
3 753 680 590 897 505 408 392 417 537 954 .867 0 -.136 .774 36 36 1.168 1.099 .856 .91 .693 945 52 20 28 96 104 -.136
4 748 680 383 407 392 417 407 .531 0 1 1 1 .362 966 52 20 28 105 113
5 739 680 388 695 303 404 392 417 322 739 .915 0 -.269 .75 30 32 1.281 1.205 .781 .83 .711 962 52 20 28 114 122 -.269
6 723 680 387 403 392 417 412 .473 0 .333 3 3 .331 949 52 20 28 122 130
7 741 680 382 424 400 426 406 .125 0 .333 0 0 .09 963 52 20 28 131 139
8 753 688 256 446 46 426 400 426 48 474 .55 0 -2.415 .6 15 11 5.565 5.333 .18 .188 .125 962 52 20 28 140 148 -2.415
9 778 704 28 400 429 400 426 426 .406 0 .404 7 0 .115 947 52 20 28 150 158
10 827 712 89 413 13 441 400 426 13 439 .295 0 -2.775 .857 5 3 6.846 6.846 .146 .146 .073 931 52 20 28 158 166 -2.775
11 852 712 129 430 30 435 400 426 31 457 .667 0 -2.057 .408 11 5 4.3 4.161 .233 .24 .131 905 52 20 28 166 174 -2.057
12 825 704 387 426 400 426 412 .102 0 .526 0 0 .057 917 52 20 28 175 183
13 828 704 383 426 400 426 407 .084 0 .174 0 0 .044 935 52 20 28 184 192
14 804 688 386 423 400 426 411 .067 0 1 0 0 .039 955 52 20 28 193 201
15 717 680 374 404 392 417 398 -.153 0 1 0 0 -.08 941 52 20 28 201 209
16 702 672 373 398 392 417 397 .112 0 .167 1 0 .058 945 52 20 28 210 218
17 686 664 380 392 384 409 404 -.128 0 1 0 0 -.063 966 52 20 28 219 227
18 668 664 7 369 387 384 409 393 -.224 0 .529 0 0 -.144 966 52 20 28 228 236
19 690 664 381 390 384 409 405 -.183 0 .714 0 0 -.101 966 52 20 28 237 245
20 700 672 14 384 393 392 417 409 .078 0 .5 1 0 .036 953 52 20 28 245 253

Total number of rows: 8832

Table truncated, full table size 1042 Kbytes.




Supplementary data files not provided
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