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Sample GSM1106 Query DataSets for GSM1106
Status Public on Feb 12, 2002
Title 1 mM Menadione (80 min) redo
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 80 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-7
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL64
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 563 560 1 500 28 480 472 569 33 602 -.017 0 5.044 1 0 0 .036 .03 28 33 -.02 1213 52 24 32 76 84 5.044
2 564 560 500 28 481 472 569 33 602 -.072 0 1.375 0 1 -.121 1061 52 24 32 84 92
3 563 560 479 7 480 472 569 8 577 .079 0 2.5 0 0 .096 929 52 24 32 93 101
4 561 560 10 475 3 481 472 569 3 572 -.16 0 -1.737 1.5 0 0 3.333 3.333 .3 .3 -.192 947 52 24 32 102 110 -1.737
5 557 560 483 11 480 472 569 13 582 .084 0 1.8 0 0 .097 947 52 24 32 111 119
6 556 552 10 488 16 479 472 569 19 588 .03 0 .926 1.25 0 1 .625 .526 1.6 1.9 .037 937 52 24 32 119 127 .926
7 560 560 10 457 479 472 569 551 .137 0 .667 0 0 .138 955 52 24 32 128 136
8 560 560 478 481 480 578 576 -.067 0 2.625 0 0 -.097 959 52 24 32 137 145
9 559 552 8 461 480 472 569 555 .035 0 .857 0 0 .037 951 52 24 32 147 155
10 559 552 4 470 479 472 569 566 -.108 0 1 0 0 -.103 939 52 24 32 155 163
11 557 552 9 493 21 479 472 569 25 594 .204 0 1.474 .778 0 0 .429 .36 2.333 2.778 .247 917 52 24 32 163 171 1.474
12 559 552 14 471 476 472 569 567 -.124 0 1.4 0 0 -.135 933 52 24 32 172 180
13 560 552 5 476 4 475 472 569 4 573 -.158 0 -.322 1.111 0 0 1.25 1.25 .8 .8 -.15 955 52 24 32 181 189 -.322
14 561 552 15 474 2 477 472 569 2 571 -.047 0 -2.907 1.333 0 0 7.5 7.5 .133 .133 -.044 966 52 24 32 190 198 -2.907
15 563 560 1 476 4 477 472 569 4 573 -.05 0 2 1.333 0 0 .25 .25 4 4 -.044 949 52 24 32 198 206 2
16 565 560 6 493 21 475 472 569 25 594 .02 0 2.059 .667 0 1 .286 .24 3.5 4.167 .021 949 52 24 32 207 215 2.059
17 562 560 3 472 475 472 569 569 -.172 0 3.333 0 0 -.149 966 52 24 32 216 224
18 563 560 466 475 472 569 561 -.247 0 2 0 0 -.232 966 52 24 32 225 233
19 563 560 472 8 472 464 559 10 569 .024 0 1 0 0 .023 966 52 24 32 234 242
20 561 560 21 482 10 475 472 569 12 581 .051 0 -.807 1.125 0 0 2.1 1.75 .476 .571 .053 953 52 24 32 242 250 -.807

Total number of rows: 8832

Table truncated, full table size 1028 Kbytes.




Supplementary data files not provided
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