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Sample GSM1110 Query DataSets for GSM1110
Status Public on Feb 12, 2002
Title CLB2 induction 40minutes (possible against CLB5 0min)
Sample type RNA
 
Channel 1
Source name T0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CLB2 40 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = Cell-cycle factors
Lot batch = y80n8a
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL61
Series (1)
GSE25 Cyclin overexpression

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT
1 284 4108 280 52 228 194 45 239 .16 0 -6.512 0 0 79 91.289 .013 .011 74.09 42 51 31 40
2 281 120 645 410 235 200 351 551 .95 0 1.548 0 0 .293 .342 3.417 2.925 .24 42 51 478 487
3 280 38 277 55 222 189 47 236 .27 0 .307 0 0 .691 .809 1.447 1.237 .25 42 51 40 49
4 292 109 580 342 238 203 292 495 .93 0 1.422 0 0 .319 .373 3.138 2.679 .28 42 51 488 497
5 285 2572 271 45 226 193 38 231 .11 0 -6.081 0 0 57.156 67.684 .017 .015 34.83 42 51 50 59
6 290 48 285 61 224 191 52 243 .52 0 .115 0 0 .787 .923 1.271 1.083 .35 42 51 498 507
7 272 266 277 41 236 201 35 236 -.17 0 -2.926 0 0 6.488 7.6 .154 .132 -6.56 42 51 60 69
8 288 42 278 48 230 196 41 237 -.03 0 -.035 0 0 .875 1.024 1.143 .976 -.04 42 51 508 517
9 272 40 273 41 232 198 35 233 0 0 -.193 0 0 .976 1.143 1.025 .875 0 42 51 70 79
10 296 33 274 46 228 194 40 234 .04 0 .278 0 0 .717 .825 1.394 1.212 .04 42 51 518 527
11 278 52 279 43 236 201 37 238 -.01 0 -.491 0 0 1.209 1.405 .827 .712 -.04 42 51 80 89
12 282 49 276 50 226 193 42 235 -.01 0 -.222 0 0 .98 1.167 1.02 .857 -.01 42 51 528 537
13 253 179 295 69 226 193 59 252 .93 0 -1.601 0 0 2.594 3.034 .385 .33 5.14 495 504 35 44
14 267 81 340 94 246 210 80 290 .93 0 -.018 0 0 .862 1.013 1.16 .988 1.04 498 507 482 491
15 248 52 275 51 224 191 44 235 .61 0 -.241 0 0 1.02 1.182 .981 .846 1.11 495 504 45 54
16 280 64 330 88 242 206 76 282 .9 0 .248 0 0 .727 .842 1.375 1.188 .87 498 507 492 501
17 255 39 264 46 218 186 39 225 .13 0 0 0 0 .848 1 1.179 1 .16 495 504 55 64
18 278 67 332 94 238 203 80 283 .88 0 .256 0 0 .713 .838 1.403 1.194 .88 498 507 502 511
19 258 40 272 40 232 198 34 232 .16 0 -.234 0 0 1 1.176 1 .85 .2 495 504 65 74
20 285 54 325 85 240 205 72 277 .92 0 .415 0 0 .635 .75 1.574 1.333 1.01 498 507 512 521

Total number of rows: 7744

Table truncated, full table size 706 Kbytes.




Supplementary data files not provided
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