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Sample GSM1111 Query DataSets for GSM1111
Status Public on Feb 12, 2002
Title CLN3 induction 30 minutes
Sample type RNA
 
Channel 1
Source name CLN3 T0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CLN3 T30
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = CLN3 - Yeast
Lot batch = y80n9bf
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL61
Series (1)
GSE25 Cyclin overexpression

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 560 7444 3399 2431 968 1075 2701 3776 -.02 0 -1.463 0 0 3.062 2.756 .327 .363 -.04 97 106 82 91 -1.463
2 464 298 1915 1157 758 842 1285 2127 .98 0 2.108 0 0 .258 .232 3.883 4.312 .21 96 105 530 539 2.108
3 541 370 1736 788 948 1053 875 1928 .93 0 1.242 0 0 .47 .423 2.13 2.365 .44 97 106 91 100 1.242
4 476 196 1290 536 754 837 596 1433 .94 0 1.604 0 0 .366 .329 2.735 3.041 .28 96 105 540 549 1.604
5 524 6484 1944 1117 827 918 1242 2160 .01 0 -2.384 0 0 5.805 5.221 .172 .192 .04 97 106 101 110 -2.384
6 479 91 879 127 752 835 141 976 .89 0 .632 0 0 .717 .645 1.396 1.549 .66 96 105 550 559 .632
7 504 1527 1820 962 858 953 1069 2022 .2 0 -.514 0 0 1.587 1.428 .63 .7 .33 97 106 111 120 -.514
8 479 87 867 111 756 840 123 963 .7 0 .5 0 0 .784 .707 1.276 1.414 .56 96 105 560 569 .5
9 497 158 1595 701 894 993 779 1772 .44 0 2.302 0 0 .225 .203 4.437 4.93 .08 97 106 121 130 2.302
10 465 86 864 102 762 846 114 960 .75 0 .407 0 0 .843 .754 1.186 1.326 .71 96 105 570 579 .407
11 499 325 2119 1231 888 986 1368 2354 .09 0 2.074 0 0 .264 .238 3.788 4.209 .01 97 106 131 140 2.074
12 468 77 871 97 774 860 107 967 .36 0 .475 0 0 .794 .72 1.26 1.39 .35 96 105 580 589 .475
13 496 695 1090 208 882 980 231 1211 .98 0 -1.589 0 0 3.341 3.009 .299 .332 4.09 547 556 86 95 -1.589
14 472 109 896 113 783 870 125 995 .74 0 .198 0 0 .965 .872 1.037 1.147 .97 552 561 533 542 .198
15 481 115 963 98 865 961 109 1070 .78 0 -.077 0 0 1.173 1.055 .852 .948 1.99 547 556 96 105 -.077
16 485 105 869 115 754 837 128 965 .82 0 .286 0 0 .913 .82 1.095 1.219 1.2 552 561 542 551 .286
17 496 95 976 122 854 948 136 1084 .78 0 .518 0 0 .779 .699 1.284 1.432 1.06 547 556 106 115 .518
18 482 90 867 79 788 875 88 963 .8 0 -.032 0 0 1.139 1.023 .878 .978 1.2 552 561 552 561 -.032
19 497 141 985 121 864 960 134 1094 .88 0 -.073 0 0 1.165 1.052 .858 .95 1.69 547 556 116 125 -.073
20 463 104 866 88 778 864 98 962 .71 0 -.086 0 0 1.182 1.061 .846 .942 1.01 552 561 562 571 -.086

Total number of rows: 7744

Table truncated, full table size 768 Kbytes.




Supplementary data files not provided
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