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Sample GSM1119 Query DataSets for GSM1119
Status Public on Feb 12, 2002
Title constant 0.32 mM H2O2 (160 min) redo
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 160 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-44
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL64
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 403 376 348 4 382 344 316 3 319 -.21 0 1.5 0 0 -.211 1225 52 28 36 70 78
2 378 376 346 2 347 344 316 1 317 -.187 0 1.429 0 0 -.216 1073 52 28 36 79 87
3 389 376 348 4 354 344 316 3 319 -.036 0 2.5 0 0 -.053 997 52 27 35 88 96
4 389 376 342 353 344 316 314 .235 0 1.5 0 0 .299 977 52 27 35 97 105
5 405 376 2 350 6 366 344 316 5 321 -.127 0 1.322 1 0 0 .333 .4 3 2.5 -.107 996 48 27 35 107 115 1.322
6 409 384 82 414 70 368 344 316 64 380 .842 0 -.358 .923 13 15 1.171 1.281 .854 .78 .784 964 52 27 35 114 122 -.358
7 411 376 342 371 344 316 314 -.208 0 1 0 0 -.309 936 52 28 36 123 131
8 410 376 348 4 372 344 316 3 319 -.239 0 2 0 0 -.284 950 52 28 36 132 140
9 404 376 332 367 344 316 305 -.039 0 1 0 0 -.043 931 52 28 36 141 149
10 396 376 339 359 344 316 311 .219 0 1.5 0 0 .26 931 52 28 36 150 158
11 386 376 340 350 344 316 312 -.016 0 1.286 0 0 -.018 941 52 27 35 158 166
12 390 376 8 340 354 344 316 312 .031 0 1 0 0 .027 957 52 27 35 167 175
13 387 376 341 350 344 316 313 .092 0 1 0 0 .096 966 52 27 35 176 184
14 385 376 336 350 344 316 308 .215 0 .667 0 0 .26 974 52 27 35 185 193
15 382 368 4 335 348 336 308 307 -.051 0 1.5 0 0 -.057 957 52 27 35 193 201
16 379 368 709 1450 1114 344 336 308 1022 1330 .971 -100 1.6 21 25 .636 .694 1.571 1.441 1.436 949 52 27 35 202 210 .528
17 397 376 345 9 357 336 308 9 317 -.073 0 1.333 0 0 -.081 979 52 27 35 211 219
18 397 376 340 4 359 336 308 4 312 -.149 0 2.5 0 0 -.177 966 52 27 35 220 228
19 400 376 1 338 363 344 316 310 .332 0 1.5 0 0 .468 966 52 27 35 229 237
20 403 376 344 365 344 316 316 -.048 0 1 0 0 -.046 953 52 27 35 237 245

Total number of rows: 8832

Table truncated, full table size 1035 Kbytes.




Supplementary data files not provided
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