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Sample GSM1120508 Query DataSets for GSM1120508
Status Public on Apr 10, 2014
Title Day 1 post PBS mock and linezolid treated sample 2
Sample type RNA
 
Source name Day 1 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.6131944488867 7277.942 1876.27857347083 0 43
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.4396827640131 1533.285 587.575332055152 0 41
ILMN_3033922 xnx7ijE2CcOSlY55eA 11.3197447337985 3003.9 742.474483076004 0 42
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3204325180478 11940.38 2498.28120435518 0 37
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.09266744686269 408.098 170.436319568906 0 29
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.5257617265679 1627.873 427.822900259797 0 40
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.51096000173303 659.2158 190.649904069347 0 32
ILMN_2737647 QblRddpw5X.qvuqKOA 8.5789585117021 153.7243 47.455524 0.2744361 36
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.601212381495 1741.503 566.935425791329 0 33
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.71649662630018 217.47 97.8263558183177 0.02756892 41
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.52424190037391 131.8567 63.3520829930942 0.5689223 31
ILMN_1213681 odfnyvXghIeuVEvU6U 9.62801718014046 744.5288 201.331147783657 0 53
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.53291967794095 135.2062 38.170086 0.508772 36
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.61690888190881 170.4222 51.6288604109379 0.1403509 33
ILMN_2891688 xV44FuIB_kt4dvuCBY 11.0920602965908 2520.413 652.089 0 36
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.5786592382745 3624.927 744.112166250492 0 42
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.66002403231858 770.3165 299.329939498527 0 30
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.56151793425894 146.5083 34.1192768078336 0.3596491 32
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.72204113893319 220.4561 89.601049415999 0.02130326 27
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.71796168261886 218.4458 87.91315 0.02631579 25

Total number of rows: 25697

Table truncated, full table size 2105 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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